View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5830_high_2 (Length: 461)
Name: NF5830_high_2
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5830_high_2 |
 | |
|
| [»] chr3 (32 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 8568577 - 8568132
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8568577 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatc |
8568478 |
T |
|
| Q |
116 |
ccacccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8568477 |
ccacctagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
8568378 |
T |
|
| Q |
216 |
atatgcaagattcatccaccaatgatgcagttggcaatctttttgaggatttcaatctaaccgcaccttcactagtacaggctctttggttcaatcccag |
315 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8568377 |
atatgcaagattcatccaccaaagacgcagttggcaatctttttgaggatttcaatctaaccgcaccttcactagtacaggctctttggttcaatcccag |
8568278 |
T |
|
| Q |
316 |
cacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtcttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8568277 |
cacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtcttt |
8568178 |
T |
|
| Q |
416 |
ccctttctttgcgcattggtagcaataatatccaatagttgctcaa |
461 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8568177 |
ccctttctttgtgcattggtagcaataatatccaatagttgctcaa |
8568132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 6721700 - 6721471
Alignment:
| Q |
8 |
cgaagaatatcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtct |
107 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||||||||||| |||||| | ||| | ||||||||||||| ||||| | ||||| || |||| |
|
|
| T |
6721700 |
cgaagaacatcaaaagattctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtct |
6721601 |
T |
|
| Q |
108 |
tacccatcccacccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatc |
207 |
Q |
| |
|
|||| |||||| ||||||||| ||||| |||| | ||| |||||| ||| ||| | || ||||||| |||||||||||| | ||| |||| || |
|
|
| T |
6721600 |
tacctatcccaatcagacccactatactgattatgggcacctggttgtcactgtcactatcagaaagcaagaaattgattatttcttctttctcatgctc |
6721501 |
T |
|
| Q |
208 |
tctaccatatatgcaagattcatccaccaa |
237 |
Q |
| |
|
|| |||||||||| |||||||||||||| |
|
|
| T |
6721500 |
tcgaccatatatgaccgattcatccaccaa |
6721471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 408
Target Start/End: Original strand, 8471977 - 8472356
Alignment:
| Q |
32 |
acatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatcccacccagacccacaa |
131 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| || | | | ||||||||||||||||| ||||||| |||||||| ||||||||| || |||||| | |
|
|
| T |
8471977 |
acatggacccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccacta |
8472076 |
T |
|
| Q |
132 |
tacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatc |
231 |
Q |
| |
|
| || || || ||||||||| || |||| |||||||||| ||||||| || | ||| ||| | ||||||||| |||| |||||||||| |
|
|
| T |
8472077 |
tgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctctaccacgtatggaagattcatc |
8472176 |
T |
|
| Q |
232 |
caccaatgatgcagttggcaatctttttgaggatttcaatctaaccgcaccttc---actagtacaggctctttggttcaatcccagcacatccttttga |
328 |
Q |
| |
|
||| || |||||||||||| ||||||| ||||||| || ||||| |||||||| ||||| | ||| || | ||||||| ||||||||||||| |
|
|
| T |
8472177 |
cactaaagatgcagttggcgatcttttcgaggattgcaggctaactgcaccttcataactagggaaacttctctgtgttaatcccaacacatccttttga |
8472276 |
T |
|
| Q |
329 |
tgagcaagcaattttagcgtgtctaacaaatctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttg |
408 |
Q |
| |
|
| ||||| | |||||| |||| | ||||| ||||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
8472277 |
tcggcaagaagttttagttcatctagcgaatctctgatcctagattcaaatcgattaatgaaagctgaaaggaagtgttg |
8472356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 7750427 - 7750551
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||| ||||| |||||||| |||| || |||||||||||| |
|
|
| T |
7750427 |
atcaaaagattctgaaacatagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagtcgggcaatggttgtcttacccatc |
7750526 |
T |
|
| Q |
116 |
ccacccagacccacaatacttatta |
140 |
Q |
| |
|
||| || |||||| ||||| |||| |
|
|
| T |
7750527 |
ccaatcacacccactatactgatta |
7750551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 6590957 - 6590855
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| | || ||||||||| ||||| ||||| || ||||| || |||||||||||| |
|
|
| T |
6590957 |
atcaaaagattttgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatc |
6590858 |
T |
|
| Q |
116 |
cca |
118 |
Q |
| |
|
||| |
|
|
| T |
6590857 |
cca |
6590855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 5250569 - 5250682
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||| |||| || | | ||||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
5250569 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccatt |
5250668 |
T |
|
| Q |
116 |
ccacccagacccac |
129 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
5250669 |
ccaccgagacccac |
5250682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 6448411 - 6448298
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||||||| |||| || || | ||| || |||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
6448411 |
atcaaaatattctgaaacatagacccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatc |
6448312 |
T |
|
| Q |
116 |
ccacccagacccac |
129 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6448311 |
ccacccagacccac |
6448298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 6519791 - 6519693
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccat |
114 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| ||||||| | | ||| ||||||||||||| || ||||||| ||||| |||||||| |
|
|
| T |
6519791 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccat |
6519693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 8455054 - 8455272
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| |||| || || ||||| ||||||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
8455054 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
8455153 |
T |
|
| Q |
116 |
ccacccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
215 |
Q |
| |
|
|| || | ||| || || || |||| || |||||||||| ||||||| || ||| ||| | ||||||| ||| | |||||| |||||| ||||| |
|
|
| T |
8455154 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccat |
8455253 |
T |
|
| Q |
216 |
atatgcaagattcatccac |
234 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
8455254 |
atatgctcgactcatccac |
8455272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 4388566 - 4388453
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||||||| |||| | | | || |||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4388566 |
atcaaaagtttctgaaacgtagacccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccatt |
4388467 |
T |
|
| Q |
116 |
ccacccagacccac |
129 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
4388466 |
ccaccgagacccac |
4388453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 6736394 - 6736595
Alignment:
| Q |
20 |
aaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatcccac |
119 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||| || ||||| ||| ||||| ||||| |||||| ||||| || |||||||| | |
|
|
| T |
6736394 |
aaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctc |
6736493 |
T |
|
| Q |
120 |
ccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatat |
219 |
Q |
| |
|
| | |||||| || || |||| || |||||||||| |||||| || ||| ||| | ||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
6736494 |
ctaaacccactatgctaattattggaacctggttgccactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatat |
6736593 |
T |
|
| Q |
220 |
gc |
221 |
Q |
| |
|
|| |
|
|
| T |
6736594 |
gc |
6736595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 404
Target Start/End: Complemental strand, 6838373 - 6838139
Alignment:
| Q |
173 |
agcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaatgatgcagttggcaatctttttgaggatttcaatc |
272 |
Q |
| |
|
|||||||| || ||||||| | ||| ||| | ||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
6838373 |
agcaaatagttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttggagatctttttgaggattgtgggc |
6838274 |
T |
|
| Q |
273 |
taaccgcaccttc---actagtacaggctctttggttcaatcccagcacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcct |
369 |
Q |
| |
|
||||||| ||||| |||||| || |||||| ||||||||| || ||||||| | ||||| |||||||| || ||| ||| ||||||||||| |
|
|
| T |
6838273 |
taaccgcgccttcataactagtgcaacttctttgtgtcaatcccaaatcacccttttgctctgcaagatattttagcttgcctagcaactctttgatcct |
6838174 |
T |
|
| Q |
370 |
agattcaaatcgattagtaaaacctgaaaggaagt |
404 |
Q |
| |
|
|||||||||| ||||||| | | ||||||| |||| |
|
|
| T |
6838173 |
agattcaaatggattagtgatagctgaaagcaagt |
6838139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 6554063 - 6553849
Alignment:
| Q |
20 |
aaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatcccac |
119 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||| || ||||| ||| ||||| ||||| |||||| ||||| || |||||||| | |
|
|
| T |
6554063 |
aaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctc |
6553964 |
T |
|
| Q |
120 |
ccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatat |
219 |
Q |
| |
|
| | |||||| || || |||| || |||||||||| |||||| || ||| ||| | ||||||| ||| | |||||| |||| ||||||||||| |
|
|
| T |
6553963 |
ctaaacccactatgctgattattggaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatttttccttatcaacatccctaccatatat |
6553864 |
T |
|
| Q |
220 |
gcaagattcatccac |
234 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
6553863 |
gcttgactcatccac |
6553849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 13270215 - 13270093
Alignment:
| Q |
18 |
caaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatccc |
117 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||| |||| || || | | ||||||||||| ||||| ||||||| | |||||||||||||| |
|
|
| T |
13270215 |
caaaagattctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccc |
13270116 |
T |
|
| Q |
118 |
acccagacccacaatacttatta |
140 |
Q |
| |
|
||||||||| ||||| |||| |
|
|
| T |
13270115 |
catcagacccactatactgatta |
13270093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 387
Target Start/End: Original strand, 5268644 - 5268830
Alignment:
| Q |
204 |
catctctaccatatatgcaagattcatccaccaatgatgcagttggcaatctttttgaggatttcaatctaaccgcaccttc---actagtacaggctct |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |||||||||||| | | ||| |||| | ||||| ||||||| ||||| ||| || |
|
|
| T |
5268644 |
catctctaccatatatgctggattcatccaccaaagatgtagttggcaatctatctaagggtttccaactaactccaccttcactactagcacaagcgtc |
5268743 |
T |
|
| Q |
301 |
ttggttcaatcccagcacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcctagattcaaatcgattagt |
387 |
Q |
| |
|
||| || ||||| |||| || |||||| | ||||| |||| |||| | |||| ||| |||||||||||||| |||||| ||||||| |
|
|
| T |
5268744 |
ttgttttaatccaagcatatgcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagt |
5268830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 5299134 - 5299374
Alignment:
| Q |
19 |
aaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatccca |
118 |
Q |
| |
|
||||| ||| ||||||| |||||| ||||| |||||||| || |||| || | ||| || |||||| |||||| ||||||| ||||| || ||||| ||| |
|
|
| T |
5299134 |
aaaagtttccgaaacatagacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattcca |
5299233 |
T |
|
| Q |
119 |
cccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatata |
218 |
Q |
| |
|
|| |||||||| || || |||| ||| ||| |||| |||| |||| |||| ||| | ||| ||| || | ||| ||| ||||||| ||||||| |
|
|
| T |
5299234 |
cctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatata |
5299333 |
T |
|
| Q |
219 |
tgcaagattcatccaccaatgatgcagttggcaatcttttt |
259 |
Q |
| |
|
||| |||||||||||||| |||| | |||||||||||||| |
|
|
| T |
5299334 |
tgctcgattcatccaccaaagatgtacttggcaatcttttt |
5299374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 6947669 - 6947873
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||||||||||||| | |||||| | |||||| ||||| |||| ||||| ||||| ||||||||| ||||| |||||| ||||| || |||||| |
|
|
| T |
6947669 |
atcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatc |
6947768 |
T |
|
| Q |
116 |
ccacccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
215 |
Q |
| |
|
|| || | |||||| || || |||| || |||||||||| |||||| || ||| ||| | ||||||| || | ||||||||||||||||||| |
|
|
| T |
6947769 |
cctcctaaacccactatgctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccat |
6947868 |
T |
|
| Q |
216 |
atatg |
220 |
Q |
| |
|
||||| |
|
|
| T |
6947869 |
atatg |
6947873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 8590129 - 8590347
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||| ||||| |||| |||| ||||| ||| ||||| ||||| |||||| ||||| || |||||| |
|
|
| T |
8590129 |
atcaaaagattcagaaacatagacccatgctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatc |
8590228 |
T |
|
| Q |
116 |
ccacccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
215 |
Q |
| |
|
|| || | ||| || || || |||| || ||||||||| ||||||| || ||| ||| | ||||||| ||| || |||||| |||||||||||| |
|
|
| T |
8590229 |
cctcctaaaccgactatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccat |
8590328 |
T |
|
| Q |
216 |
atatgcaagattcatccac |
234 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
8590329 |
atatgctcgactcatccac |
8590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 6266122 - 6266243
Alignment:
| Q |
19 |
aaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatccca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| |||| || || | | ||||||||||| ||||| | ||||| | |||||||| ||||| |
|
|
| T |
6266122 |
aaaagtttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatcccc |
6266221 |
T |
|
| Q |
119 |
cccagacccacaatacttatta |
140 |
Q |
| |
|
||||||||| ||||| |||| |
|
|
| T |
6266222 |
gtcagacccactatactgatta |
6266243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 6142711 - 6142779
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgta |
84 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||||| || || | ||||||||||||| |
|
|
| T |
6142711 |
atcaaaagatcttggaacatggacccaagcattaagttcaaattgctcctgtatcctgtggtcattgta |
6142779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 404
Target Start/End: Original strand, 5250753 - 5250960
Alignment:
| Q |
200 |
tcatcatctctaccatatatgcaagattcatccaccaatgatgcagttggcaatctttttgaggatttcaatctaaccgcaccttcactagt----acag |
295 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||| | || |||||| ||||| | | ||| |||| | ||||| ||||||||||| | | || |
|
|
| T |
5250753 |
tcaccatctctaccatatatgctcgattcatccaccaaagctgtagttggaaatctatctaagggtttccaactaacgccaccttcactactagcaaaag |
5250852 |
T |
|
| Q |
296 |
gctctttggttcaatcccagcacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcctagattcaaatcgattagtaaaacctg |
395 |
Q |
| |
|
||| || |||||||| |||| ||||||||| | ||||| |||| |||| | |||| ||| ||||| ||||||||||||||| ||||||| ||| || |
|
|
| T |
5250853 |
cctc-atgtttcaatccgagcatatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatg |
5250951 |
T |
|
| Q |
396 |
aaaggaagt |
404 |
Q |
| |
|
||| ||||| |
|
|
| T |
5250952 |
aaaagaagt |
5250960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 6259595 - 6259706
Alignment:
| Q |
29 |
gaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatcccacccagaccca |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| || || | | ||||||||||| ||||| | ||||| | |||||||||||||| |||||||| |
|
|
| T |
6259595 |
gaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagaccca |
6259694 |
T |
|
| Q |
129 |
caatacttatta |
140 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
6259695 |
ctatactgatta |
6259706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 6900516 - 6900562
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgct |
62 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
6900516 |
atcaaaagattccgaaacatggacccaagctttaatttcaaaatgct |
6900562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 6917526 - 6917564
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttc |
54 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6917526 |
atcaaaagattctgaatcatggacccaagctttaagttc |
6917564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 6479611 - 6479510
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||||||||||||| || | ||||| ||||| || ||||| ||||| |||||| ||||| || |||||| |
|
|
| T |
6479611 |
atcataagattctgaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatc |
6479512 |
T |
|
| Q |
116 |
cc |
117 |
Q |
| |
|
|| |
|
|
| T |
6479511 |
cc |
6479510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 6882935 - 6883056
Alignment:
| Q |
19 |
aaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatccca |
118 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |||| | | | ||| ||||||||| ||||| | || ||||| |||||||||||||| |
|
|
| T |
6882935 |
aaaagattctggaacattcacccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtcttacccatcccc |
6883034 |
T |
|
| Q |
119 |
cccagacccacaatacttatta |
140 |
Q |
| |
|
||||||||| ||||| |||| |
|
|
| T |
6883035 |
atcagacccactatactaatta |
6883056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 5268514 - 5268569
Alignment:
| Q |
74 |
tggtcattgtagacaagtcgagcaagagtggtcttacccatcccacccagacccac |
129 |
Q |
| |
|
||||||||||| || ||| ||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
5268514 |
tggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccac |
5268569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 5281084 - 5281130
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgct |
62 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
5281084 |
atcaaaaaattctgaaacatagacccaagctttatgttcaaaatgct |
5281130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 6169648 - 6169709
Alignment:
| Q |
360 |
ctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtctttcccttt |
421 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||| ||| |||| ||||||||||| |
|
|
| T |
6169648 |
ctttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttt |
6169709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 6246047 - 6246108
Alignment:
| Q |
360 |
ctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtctttcccttt |
421 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||| ||| |||| ||||||||||| |
|
|
| T |
6246047 |
ctttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttt |
6246108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 6259911 - 6259972
Alignment:
| Q |
360 |
ctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtctttcccttt |
421 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||| ||| |||| ||||||||||| |
|
|
| T |
6259911 |
ctttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttt |
6259972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 6838469 - 6838420
Alignment:
| Q |
77 |
tcattgtagacaagtcgagcaagagtggtcttacccatcccacccagacc |
126 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
6838469 |
tcattgtagacaagctgagcaagggtggtctttcccatcccacccaaacc |
6838420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 6572927 - 6572677
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||| ||||| || ||||| | | | ||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
6572927 |
atcaaatgattttgagacatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatc |
6572828 |
T |
|
| Q |
116 |
ccacccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
215 |
Q |
| |
|
||||||| |||||| || || |||| || |||||| | || |||| | ||||||||| |||||||||| | ||| ||| | |||||||||| |
|
|
| T |
6572827 |
ccacccaaacccactatgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctttctcaccctctctaccat |
6572728 |
T |
|
| Q |
216 |
atatgcaagattcatccaccaatgatgcagttggcaatctttttgaggatt |
266 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6572727 |
atatgcaagatttatccaccagagatgcagttggcgatctttttgaggatt |
6572677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 7102 - 6888
Alignment:
| Q |
20 |
aaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatcccac |
119 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||| || ||||| ||| ||||| ||||| |||||| ||||| || |||||||| | |
|
|
| T |
7102 |
aaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctc |
7003 |
T |
|
| Q |
120 |
ccagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatat |
219 |
Q |
| |
|
| | |||||| || || |||| || |||||||||| |||||| || ||| ||| | ||||||||||| | |||||| |||| ||||||||||| |
|
|
| T |
7002 |
ctaaacccactatgctgattattggaacctggttgccactgtcattgccttcaagtaaaaacttgattattttttccttatcaacatccctaccatatat |
6903 |
T |
|
| Q |
220 |
gcaagattcatccac |
234 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
6902 |
gcttgactcatccac |
6888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 35140017 - 35139893
Alignment:
| Q |
16 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctaccttgtggtcattgtagacaagtcgagcaagagtggtcttacccatc |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||| |||| | || | | ||||||||||| |||||| | | || || ||||||||| || |
|
|
| T |
35140017 |
atcaaaagattcagaaacatggacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaagttgggttagggttgtcttacccttc |
35139918 |
T |
|
| Q |
116 |
ccacccagacccacaatacttatta |
140 |
Q |
| |
|
|| ||||||||||||||| |||| |
|
|
| T |
35139917 |
cccatcagacccacaatactgatta |
35139893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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