View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5830_low_3 (Length: 440)

Name: NF5830_low_3
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5830_low_3
NF5830_low_3
[»] chr5 (5 HSPs)
chr5 (12-282)||(16984241-16984501)
chr5 (283-415)||(28553141-28553273)
chr5 (283-415)||(28561058-28561190)
chr5 (283-362)||(28549010-28549089)
chr5 (283-358)||(28556194-28556269)
[»] chr1 (3 HSPs)
chr1 (291-389)||(7324058-7324156)
chr1 (291-389)||(7328673-7328771)
chr1 (102-146)||(5211937-5211981)
[»] chr4 (2 HSPs)
chr4 (230-282)||(45420431-45420483)
chr4 (102-146)||(53709234-53709278)
[»] chr8 (1 HSPs)
chr8 (102-146)||(26382397-26382441)
[»] chr7 (3 HSPs)
chr7 (102-146)||(5634014-5634058)
chr7 (102-146)||(11568627-11568671)
chr7 (102-146)||(18806466-18806510)
[»] chr6 (1 HSPs)
chr6 (102-146)||(19111417-19111461)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 16984501 - 16984241
Alignment:
Q  12 atactcaccattgtcttccttcatccacacaagtggatcttcttgtactaaagggtatataaaggcgtgttggtaatatgcttcacagtctgttgatcaa 111  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||| | || ||| ||  |||||||||| |||||||| ||||       ||||||||    
T  16984501 atactcaacattgtcttccttcatccacacaagtcggtcttcttgtattgaaaggtgta--aaggcgtgttagtaatatgattca-------ttgatcaa 16984411  T
Q  112 aaatcgaatgtaagaaaggaatattccaagctttatcatctgaaagattacagtctcatactcgaagctctgctagagtggaaattccattacattgttg 211  Q
    || | ||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||| |    
T  16984410 aatttgaatgtaagaaaggaatgttccaagctttatcatctggaagaatacagtctgatactcgaagctctgctagaggggaaattccattatattgtgg 16984311  T
Q  212 agtaacgaaactattatcagagatccatatgttgttccaaaccggtatagagaacccatcaccaatcttcc 282  Q
    ||||| |||||||||||||||| || |  |||||||||||| | |||||||||||||||||||||||||||    
T  16984310 agtaaggaaactattatcagag-tctagttgttgttccaaatcagtatagagaacccatcaccaatcttcc 16984241  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 283 - 415
Target Start/End: Complemental strand, 28553273 - 28553141
Alignment:
Q  283 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaaactaataatggcttatgaat 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28553273 tataggaaaatgtatttcgatcgttttcattgcatatgtgatgtctgtaatatacatctattacaacagtatatcaggaaactaataatggcttatgaat 28553174  T
Q  383 acaaattgccatttgacttattcggttaataat 415  Q
    |||||||| |||||||||||||| |||||||||    
T  28553173 acaaattgtcatttgacttattctgttaataat 28553141  T

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Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 283 - 415
Target Start/End: Complemental strand, 28561190 - 28561058
Alignment:
Q  283 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaaactaataatggcttatgaat 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28561190 tataggaaaatgtatttcgatcgttttcattgcatatgtgatgtctgtaatatacatctattacaacagtatatcaggaaactaataatggcttatgaat 28561091  T
Q  383 acaaattgccatttgacttattcggttaataat 415  Q
    |||||||| |||||||||||||  |||||||||    
T  28561090 acaaattgtcatttgacttattatgttaataat 28561058  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 28549089 - 28549010
Alignment:
Q  283 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaa 362  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  28549089 tataggaaaatgtatttcgatcgttttcattgcatatgtgatgtttgtaatatacatctgttacaacagtatatcaggaa 28549010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 28556269 - 28556194
Alignment:
Q  283 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatca 358  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  28556269 tataggaaaatgtattttgatcgttttcattgcatatgtgatgtatgtaatatacatctgttacaacagtatatca 28556194  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 7324058 - 7324156
Alignment:
Q  291 aatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaaactaataatggcttatgaatacaaatt 389  Q
    ||||||||||||||  ||| |||||||| |||||||||   |||||| ||||||||||   || || |||||| |||||||||||||||||||||||||    
T  7324058 aatgtatttcgatgcctttgattgcatacgtgatgtctacaatatacctctgttacaatgataaattaggaaagtaataatggcttatgaatacaaatt 7324156  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 7328673 - 7328771
Alignment:
Q  291 aatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaaactaataatggcttatgaatacaaatt 389  Q
    ||||||||||||||  ||| |||||||| |||||||||   |||||| ||||||||||   || || |||||| |||||||||||||||||||||||||    
T  7328673 aatgtatttcgatgcctttgattgcatacgtgatgtctacaatatacctctgttacaatgataaattaggaaagtaataatggcttatgaatacaaatt 7328771  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 5211937 - 5211981
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  5211937 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 5211981  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 45420483 - 45420431
Alignment:
Q  230 agagatccatatgttgttccaaaccggtatagagaacccatcaccaatcttcc 282  Q
    ||||||||||||||| |||||||||||||||||| |||| || ||||||||||    
T  45420483 agagatccatatgttattccaaaccggtatagaggacccgtctccaatcttcc 45420431  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 53709234 - 53709278
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    ||||||| |||||| ||| |||||||||||| |||||||||||||    
T  53709234 tgttgataaaaaatagaaagtaagaaaggaacattccaagcttta 53709278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 26382397 - 26382441
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  26382397 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 26382441  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 5634058 - 5634014
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  5634058 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 5634014  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 11568627 - 11568671
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11568627 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 11568671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 18806510 - 18806466
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    |||||||||||||| ||| |||||||||||| ||||||| |||||    
T  18806510 tgttgatcaaaaattgaaagtaagaaaggaacattccaaacttta 18806466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 19111417 - 19111461
Alignment:
Q  102 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 146  Q
    |||||||||||||| ||| |||||||||||| ||| |||||||||    
T  19111417 tgttgatcaaaaatagaaagtaagaaaggaacattacaagcttta 19111461  T

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