View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5830_low_4 (Length: 294)
Name: NF5830_low_4
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5830_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 11479996 - 11480267
Alignment:
| Q |
1 |
aagaataataaatttatatttactaaccatcattgtattttcatcaacaacaaatataaacgtgnnnnnnnaaaagacatatttcgacatgattaaccat |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11479996 |
aagaataataaatttatctttattaaccatcattgtttcttcatcaacaacaaatataaacgtgtttttttaaaagacatatttcgacgtgattaaccat |
11480095 |
T |
|
| Q |
101 |
aattttttagatgttcaaatgatctccatcaaaactcgtaaattatggttaaccacatcaactatcgttgttgatgaagttatgttgatgcagtggcgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11480096 |
aattttttagatgttcaaatgatctccatcaaaactcgtaaattatggttaaccacatcaactatcgttgttgatgaagttatgttgatgcagcggcgga |
11480195 |
T |
|
| Q |
201 |
gctcttaaggagccaaacggagcagtggctccccccaccaannnnnnnnacataaaataacttaggaagatacaaaaat |
279 |
Q |
| |
|
||||||||| |||| || |||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11480196 |
gctcttaagaagcccaagggagca-------cccccaccaattttttttacataaaataacttaggaagatacaaaaat |
11480267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 31305986 - 31306031
Alignment:
| Q |
192 |
agtggcggagctcttaaggagccaaacggagcagtggctcccccca |
237 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31305986 |
agtggcagagctcttaaggagcctaagggagcagtggctcccccca |
31306031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 34211631 - 34211580
Alignment:
| Q |
190 |
gcagtggcggagctcttaaggagccaaacggagcagtggctccccccaccaa |
241 |
Q |
| |
|
||||||||||| || |||||||| | || ||||||||||||||||||||||| |
|
|
| T |
34211631 |
gcagtggcggaacttttaaggagtctaagggagcagtggctccccccaccaa |
34211580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 6047855 - 6047897
Alignment:
| Q |
192 |
agtggcggagctcttaaggagccaaacggagcagtggctcccc |
234 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
6047855 |
agtggcggagctcttaaagagccaaaaggagcattggctcccc |
6047897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University