View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831-Insertion-1 (Length: 1060)
Name: NF5831-Insertion-1
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 647; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 174 - 999
Target Start/End: Complemental strand, 7897518 - 7896698
Alignment:
| Q |
174 |
taagttatgtcatgactctttaatttgtgctgatagggtacatgtgtacttaatgaatttcaggacttagccaacttttatatctttcctcaaacggttc |
273 |
Q |
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| T |
7897518 |
taagttatgtcatgactctttaatttgtgctgatagggtacatatgtacttaatgaatttcaggacttagccaacttttatatctttcctcaaacggttc |
7897419 |
T |
|
| Q |
274 |
tattcctgaaataaataggaatgaaaagtttagagaatgaaaattacccgagctacgtttggcggagcattcttcgagcgcggttcattgtccacggagg |
373 |
Q |
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| T |
7897418 |
tattcctgaaataaataggaatgaaaagtttagagaatgaaaattacccgagctacgtttggcggagcattc----------gttcattgtccgcggagg |
7897329 |
T |
|
| Q |
374 |
ggcgcgttggtgtattgggccaggtaatttcattcctattattaacgaaccttggcttaaaaatggcagatgcataacatgtaattcttttgagacaaat |
473 |
Q |
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| T |
7897328 |
ggcgtgttggtgtattgggccaggtaattccattcctattattaatgaaccttggcttaaaaatggcagatgcataacaggtaattctt--gagacaaat |
7897231 |
T |
|
| Q |
474 |
cctcttcacaatttcactgttgctagtttgattgatactgatgtcaaacaatggaattccaatttaatccaccaactctttagtaatgcacaggctgctg |
573 |
Q |
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| T |
7897230 |
cctcttcacaatttcactgttgctagtttgattgatactgatgtcaaacaatggaattccaatttaatccaccaactctttagtaatgcacaggctgctg |
7897131 |
T |
|
| Q |
574 |
atgttttgaataccccgttagttcctcatatacctgctgacaatttaatttggaaagcagagaaaaatggaatttattctgtgaaaagtgcgtatagatt |
673 |
Q |
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| T |
7897130 |
atattttgaataccccgttagttcttcatatacctgctgacaatttaatttggaaaggagagaaaaatggaatttattctgtgaaaagtgcgtataggtt |
7897031 |
T |
|
| Q |
674 |
gtgtgtacaggagctgattgatgtttcgcacttgcggcctccgggcaattggaatgccatatggaatttaaaggctccaccaaaaattcaaaactttctt |
773 |
Q |
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| T |
7897030 |
gtgtgtacaggagctgattgatgtttcgcacttgcggcgtccgggcaattggaatgtcatatggaatttaaaggctccaccaaaaattcaaaactttctt |
7896931 |
T |
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| Q |
774 |
tggcgcatatgtaggggctgcttaccaacctgagctcgattacagtctaaaggggttgaatgtccagtcaattgtgtgagttgtaatgcaatggtggagg |
873 |
Q |
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| T |
7896930 |
tggcacgtatgtaggggctgcttaccaaccagagctcaattacagtctaaaggggttgaatgtccagtcaattgtgtgagttgtaatgcaatggtggagg |
7896831 |
T |
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| Q |
874 |
acttggctcatgnnnnnnnccactgtccttttgcagttcaaact--gc-agtagca-gtttgt-gcatactgtcatgacagaaat-cagcaaagcatctc |
967 |
Q |
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| T |
7896830 |
acttggctcatgtttttttccactgtccttttgcagttcaaacttggcaagtagcaggtttgtggcatactgtcatgacagaaatccagcaaagcatctc |
7896731 |
T |
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| Q |
968 |
agctg-agctgctaatttctcccttcttcagac |
999 |
Q |
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| T |
7896730 |
agctgaagctgctattttctcccttcttcagac |
7896698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 7898132 - 7897963
Alignment:
| Q |
9 |
tcctttatataagtcactatattttccattcattgtaggtgaacacacaaccatgcaagtgcagtctacaagcatattttcacacctcataatgaattaa |
108 |
Q |
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| T |
7898132 |
tcctttatataagtcactatattttccattccttgtgggtgaacatacaaccatgcaagtgcagtctacaagcatattttcacaccttataatgaattaa |
7898033 |
T |
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| Q |
109 |
cataacaatacatggtttaccaaagctgaacttgccatttaggtatagccgagtgcaatatcatttaagt |
178 |
Q |
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| T |
7898032 |
cataacaatacatggtttaccaaagttgaacttgccatttaggtatagccgagtgcaatatcatttaagt |
7897963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 7891948 - 7891878
Alignment:
| Q |
9 |
tcctttatataagtcactatattttccattcattgtaggtgaacacacaaccatgcaagtgcagtctacaa |
79 |
Q |
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| T |
7891948 |
tcctttatgtaagtcactatattttccattccttgtgggtgaacataaaaccatgcaagcgcagtctacaa |
7891878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 7890538 - 7890480
Alignment:
| Q |
206 |
atagggtacatgtgtacttaatgaatttcaggacttagccaacttttatatctttcctcaa |
266 |
Q |
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| T |
7890538 |
atagggtacatgt--acttactgaatttcaggacttagccaacttttatatctctcctcaa |
7890480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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