View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831-Insertion-10 (Length: 238)
Name: NF5831-Insertion-10
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 35324858 - 35325005
Alignment:
| Q |
32 |
taattggtgtcaaatcctatttctatgtgctggtattggttaattgttattttgtggaacatttattgtatttctggttggttgtcttctgtggtacatc |
131 |
Q |
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| T |
35324858 |
taattggtgtcaaatcctatttctatgtgcgggtattggttaattgttattttgtggaacatttgttgtatttctggttggttgtcttctgtagtacatc |
35324957 |
T |
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| Q |
132 |
ttgtgaaagatagtctattgttcgtttaatatatttcattttgatttc |
179 |
Q |
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| T |
35324958 |
ttgtgaaagatagtctcttgttcgtttaatatatttcattttgatttc |
35325005 |
T |
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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 23878732 - 23878904
Alignment:
| Q |
9 |
gttaactttcattataactttcataattggtgtcaaatcct-atttctatgtgctggtattggttaattgtta-ttttgtggaacatttattgtatttct |
106 |
Q |
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| T |
23878732 |
gttaattttcattatagctttcacaattggtgccaaacccccatttctatgtgcggatattggttaattgttatttttgttgaacttttgctgtattt-- |
23878829 |
T |
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| Q |
107 |
ggttggttgtcttctgtggtacatcttgt----gaaagatagtctattgttcgtttaatatatttcattttgatttc |
179 |
Q |
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| T |
23878830 |
--tcggttgtcttctaaggtacatcttatgccggcaagatagtttgttgttcgtttaatatatttcatttttatttc |
23878904 |
T |
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