View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831-Insertion-11 (Length: 215)
Name: NF5831-Insertion-11
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 34695265 - 34695474
Alignment:
| Q |
9 |
tagagaagcaatgacttagtgaaacaatctgcaacttgatcctgagatgacatagggagaggctttaaaatgcccgcttcaagcttttctctagttataa |
108 |
Q |
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| T |
34695265 |
tagagaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgatatagggagaagctttaaaatgcctgcttgaagcttttc-ctgactatat |
34695363 |
T |
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| Q |
109 |
aatgtgattgatttta------gaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaatta |
202 |
Q |
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| T |
34695364 |
gatg--aataattataagatgtgaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaatta |
34695461 |
T |
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| Q |
203 |
tacatgacattgt |
215 |
Q |
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| T |
34695462 |
tacatgacattgt |
34695474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 34717677 - 34717886
Alignment:
| Q |
9 |
tagagaagcaatgacttagtgaaacaatctgcaacttgatcctgagatgacatagggagaggctttaaaatgcccgcttcaagcttttctctagttataa |
108 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||| || |||| |
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| T |
34717677 |
tagagaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgatatagggagaagctttaaaatgcctgcttgaagcttttc-ctgactatat |
34717775 |
T |
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| Q |
109 |
aatgtgattgatttta------gaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaatta |
202 |
Q |
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| T |
34717776 |
gatg--aataattataagatgtgaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaatta |
34717873 |
T |
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| Q |
203 |
tacatgacattgt |
215 |
Q |
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| T |
34717874 |
tacatgacattgt |
34717886 |
T |
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