View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5831-Insertion-2 (Length: 1000)

Name: NF5831-Insertion-2
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5831-Insertion-2
NF5831-Insertion-2
[»] chr4 (15 HSPs)
chr4 (9-537)||(7474255-7474788)
chr4 (623-876)||(7474874-7475129)
chr4 (82-200)||(24221775-24221893)
chr4 (82-200)||(26688354-26688472)
chr4 (82-200)||(16822086-16822203)
chr4 (880-991)||(7475214-7475324)
chr4 (82-200)||(41477475-41477594)
chr4 (91-200)||(39068563-39068672)
chr4 (76-200)||(30543669-30543792)
chr4 (82-197)||(23185413-23185528)
chr4 (101-200)||(9958376-9958475)
chr4 (116-200)||(33615448-33615532)
chr4 (82-200)||(35668139-35668257)
chr4 (43-120)||(15329269-15329346)
chr4 (80-194)||(42547052-42547167)
[»] scaffold0688 (2 HSPs)
scaffold0688 (82-200)||(2721-2839)
scaffold0688 (82-200)||(4388-4506)
[»] chr5 (5 HSPs)
chr5 (94-200)||(6011166-6011272)
chr5 (44-194)||(23928382-23928532)
chr5 (146-200)||(7945646-7945700)
chr5 (82-200)||(12854199-12854317)
chr5 (42-127)||(34696286-34696371)
[»] chr1 (16 HSPs)
chr1 (96-200)||(28250964-28251068)
chr1 (101-200)||(1246818-1246917)
chr1 (101-200)||(7145571-7145670)
chr1 (28-200)||(43312705-43312877)
chr1 (96-200)||(42666692-42666795)
chr1 (82-200)||(32829396-32829514)
chr1 (80-200)||(26262234-26262354)
chr1 (29-173)||(17190012-17190156)
chr1 (80-175)||(31964233-31964328)
chr1 (44-194)||(14795996-14796146)
chr1 (82-200)||(28881946-28882063)
chr1 (107-200)||(48788595-48788683)
chr1 (44-194)||(14804870-14805020)
chr1 (153-200)||(24250360-24250407)
chr1 (80-159)||(50050370-50050449)
chr1 (80-194)||(31199985-31200099)
[»] chr7 (8 HSPs)
chr7 (82-200)||(26624315-26624433)
chr7 (82-200)||(44524413-44524531)
chr7 (43-143)||(32538003-32538103)
chr7 (44-200)||(37633060-37633216)
chr7 (42-117)||(8804876-8804951)
chr7 (39-194)||(36107066-36107221)
chr7 (95-170)||(49105873-49105948)
chr7 (44-193)||(40210585-40210734)
[»] chr2 (14 HSPs)
chr2 (86-200)||(18765142-18765256)
chr2 (82-200)||(20565328-20565446)
chr2 (76-200)||(13369766-13369890)
chr2 (82-200)||(5702603-5702721)
chr2 (82-200)||(17206225-17206343)
chr2 (101-200)||(20464458-20464557)
chr2 (86-200)||(36441311-36441425)
chr2 (95-200)||(18890625-18890730)
chr2 (86-200)||(24140538-24140647)
chr2 (92-159)||(14793004-14793071)
chr2 (110-200)||(5533731-5533821)
chr2 (28-200)||(8423827-8423999)
chr2 (39-194)||(30357411-30357566)
chr2 (115-200)||(17473702-17473787)
[»] chr8 (13 HSPs)
chr8 (102-200)||(39330587-39330685)
chr8 (82-200)||(24617306-24617424)
chr8 (95-200)||(44172695-44172800)
chr8 (41-192)||(22342934-22343085)
chr8 (41-192)||(22354594-22354745)
chr8 (146-200)||(43799740-43799794)
chr8 (81-198)||(23443306-23443423)
chr8 (82-200)||(13248085-13248202)
chr8 (129-200)||(9994764-9994835)
chr8 (28-170)||(30233434-30233576)
chr8 (41-170)||(15004164-15004293)
chr8 (39-200)||(41492410-41492575)
chr8 (112-200)||(41293215-41293303)
[»] chr6 (5 HSPs)
chr6 (109-200)||(31261149-31261240)
chr6 (28-200)||(24261192-24261363)
chr6 (53-200)||(9605949-9606095)
chr6 (42-200)||(24496262-24496420)
chr6 (80-194)||(30125768-30125882)
[»] chr3 (9 HSPs)
chr3 (94-200)||(46552194-46552300)
chr3 (111-200)||(7840888-7840977)
chr3 (43-200)||(8262546-8262703)
chr3 (82-200)||(41237188-41237306)
chr3 (28-200)||(45222328-45222500)
chr3 (79-194)||(39084778-39084893)
chr3 (41-192)||(44269786-44269937)
chr3 (36-173)||(28699354-28699490)
chr3 (80-194)||(4773878-4773992)
[»] scaffold0001 (1 HSPs)
scaffold0001 (80-194)||(396890-397004)


Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 537
Target Start/End: Original strand, 7474255 - 7474788
Alignment:
Q  9 aacttgggatcattagtatggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagata 108  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||  |||||||||||| || ||||||||||||||||||    
T  7474255 aacttgggatcattagtatggtgtacatgaatcggtttgggttcggtttgatcaaacctaaaactcgaattatataggatactccggtttgagtgagata 7474354  T
Q  109 aaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgg-----gttgggttggattgaataatgggttacccaacttattaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  7474355 aaataaccacccgttatataattggatgagtttggttaaacacactaatttttgggttgggttgggttggattgaataatgggttacccaacttattaag 7474454  T
Q  204 gaagatgaccctaatgattccttaagaatcaaagagggggtgcgaaaagtaaacagtttacattgtccaagttttaagtccaataaaacaaaatacaatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7474455 gaagatgaccctaatgattccttaagaatcaaagagggggtgcgaaaagtaaacagtttactttgtccaagttttaagtccaataaaacaaaatacaatt 7474554  T
Q  304 cttactcatcttcttcataattcgttattcaaccatcaaaacgcgatcgatctgagtgtgagaagcttcagctatggcgttcttgaagggaaaggcagtc 403  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7474555 cttactcatcttcttcattattcgttattcaaccatcaaaacgcgatcgatctgagtgtgagaagcttcagctatggcgttcttgaagggaaaggcagtt 7474654  T
Q  404 gttaccaaagtggcagcgttggcgagattcggtgtgcttccagctgctatggtggctgctctcgtctactctcctcctaattacgctcaaaaacaaacct 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7474655 gttaccaaagtggcagcgttggcgagattcggtgtgcttccagctgctatggtggctgctctcgtctactctcctcctaattacgctcaaaaacaaacct 7474754  T
Q  504 ccgccaccaccaattaggtaattcattccttcaa 537  Q
    ||||||||||||||||||||||||||||||||||    
T  7474755 ccgccaccaccaattaggtaattcattccttcaa 7474788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 623 - 876
Target Start/End: Original strand, 7474874 - 7475129
Alignment:
Q  623 gagtgaataattaatttaggttatgaaattattactgattaaaactttgctaaaggccatttagtattgtctacgagtgggtttgaactttgg-tgcgtt 721  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  7474874 gagtgaataattaatttaggttatgaaattattactgattaaaactttgctaaaggccatttagtattgtctccgagtgggtttgaactttgggtgcgtt 7474973  T
Q  722 tgatctgcgaaaaaatgaatgataggatatgacatgacaacttaagttgcattgtgtttgattgtaaaactgttttagagagagggcgaatcggggcaag 821  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7474974 tgatctgcgaaaaaatgaatgacaggatatgacatgacaacttaagttgcattgtgtttgattgtaaaactgttttagagagagggcgaatcggggcaag 7475073  T
Q  822 tgatatgac-aaagctgaaattc-tgttcctggttaaaccatggtcacaactttttg 876  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  7475074 tgatatgacaaaagctgaaattcttgttcctcgttaaaccat-gtcacaactttttg 7475129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 24221893 - 24221775
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||  ||||| |  ||||||  |||||| |||||||||||||||||||||||||  ||    
T  24221893 atagggtactccggtttgagtgaggtaaaataaccactcgttatactattgggtaggtttgggcaaacccactaatttttgggttgggttggattgggta 24221794  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||||||||||||    
T  24221793 atgggttacccaacttatt 24221775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 26688472 - 26688354
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||  ||||| || ||||||  ||| || |||||||||||||||||||||||||  ||    
T  26688472 ataggatactccggtttgagtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaatccactaatttttgggttgggttggattgggta 26688373  T
Q  182 atgggttacccaacttatt 200  Q
    || ||||||||||||||||    
T  26688372 ataggttacccaacttatt 26688354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 16822203 - 16822086
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||  ||||| || ||||||  |||||| ||||||||||||||||||||||||| ||     
T  16822203 atagggtactccggtttgggtgagg-aaaataaccacccgttatactattgggtgggtttggacaaacccactaatttttgggttgggttggattggatg 16822105  T
Q  182 atgggttacccaacttatt 200  Q
    |||| ||||||||||||||    
T  16822104 atggattacccaacttatt 16822086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 880 - 991
Target Start/End: Original strand, 7475214 - 7475324
Alignment:
Q  880 caataccgtaaaagtttttcccttggtgttgttctgactagtacttagatcaaacacacctttttgtgtc-atggtagtact---atacatattgctagg 975  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    |||||||||||||     
T  7475214 caataccgtaaaagtttttct----gtgttgttctgactagtacttagatcaaacacacc-ttttgtgtcaatggtagtacttaattacatattgctagt 7475308  T
Q  976 ttgtgtaggtaggtag 991  Q
    ||||||||||||||||    
T  7475309 ttgtgtaggtaggtag 7475324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 41477475 - 41477594
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttata-taattggatgagtttggttaaacccgctaatttttgggttgggttggattgaat 180  Q
    |||||||| |||| |||| || || |||||||||||||||||||| || ||||||| ||||||  ||| || ||||||||||||||| |||||||||  |    
T  41477475 atagggtactccgatttgggtaaggtaaaataaccacccgttatactatttggatgggtttgggcaaatccactaatttttgggttgtgttggattgggt 41477574  T
Q  181 aatgggttacccaacttatt 200  Q
    ||||||||||||||||||||    
T  41477575 aatgggttacccaacttatt 41477594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 39068672 - 39068563
Alignment:
Q  91 tccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttac 190  Q
    ||||||||| ||||| ||||||||||||||||||||  ||||  || ||||||  |||||| || | ||||||||||||||||||||  |||||||||||    
T  39068672 tccggtttgggtgaggtaaaataaccacccgttatactattgagtgtgtttgggcaaacccactgagttttgggttgggttggattgggtaatgggttac 39068573  T
Q  191 ccaacttatt 200  Q
    ||||||||||    
T  39068572 ccaacttatt 39068563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 30543669 - 30543792
Alignment:
Q  76 aattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggat 175  Q
    ||||| |||||||| |||||||||  |||| ||||||||||| ||||||||  ||||| || ||||||   |||||  ||||||||||||||||||||||    
T  30543669 aattaaatagggtactccggtttggatgaggtaaaataaccatccgttatactattgggtgggtttggacgaaccca-taatttttgggttgggttggat 30543767  T
Q  176 tgaataatgggttacccaacttatt 200  Q
    ||  |||||||||||||||||||||    
T  30543768 tgggtaatgggttacccaacttatt 30543792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 23185528 - 23185413
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    ||||| || ||||||||| ||||| ||||||||||||  ||||||  |||||  | ||||||  |||||| |||||||||||||||||||||||||  ||    
T  23185528 ataggatactccggtttgggtgaggtaaaataaccacatgttatactattgggcgggtttggacaaacccactaatttttgggttgggttggattgggta 23185429  T
Q  182 atgggttacccaactt 197  Q
    ||||||||||||||||    
T  23185428 atgggttacccaactt 23185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 9958376 - 9958475
Alignment:
Q  101 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||| |||||||||||||||||||   |||||||  ||||||  |||||| |||| ||||||||||||||||||||  ||||| |||||||||||||||    
T  9958376 gtgaggtaaaataaccacccgttattctattggataggtttggacaaacccactaagttttgggttgggttggattgggtaatgagttacccaacttatt 9958475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 33615448 - 33615532
Alignment:
Q  116 cacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |||||||||||  ||||  || ||||||  |||||| ||||||||||||||||||||||||   |||||||||||||||||||||    
T  33615448 cacccgttatactattgtgtgggtttgggaaaaccctctaatttttgggttgggttggattaggtaatgggttacccaacttatt 33615532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 35668139 - 35668257
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| ||| ||||  ||||| |||||||| |||  ||||||  ||||| || ||||||  |||||| |||||||||||||||||||| ||||  ||    
T  35668139 atagggtactccagtttaggtgaggtaaaataatcactggttatactattgggtgggtttggacaaacccactaatttttgggttgggttgaattgcgta 35668238  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||  ||||||||    
T  35668239 atgggttacaaaacttatt 35668257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 15329269 - 15329346
Alignment:
Q  43 gtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccaccc 120  Q
    ||||||||| | |||||||||||  ||||||  ||  ||||||||| |||| ||||||||||| ||||||||||||||    
T  15329269 gtttgggttggatttgatcaaacccaaaacccaaaccatatagggttttccagtttgagtgaggtaaaataaccaccc 15329346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 42547052 - 42547167
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccaccc-gttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattga 178  Q
    |||||||||| ||||||||| || |||||||||| |||||| |||| || | ||| || ||||||  |||||| ||||||| ||| |||| |||| |||     
T  42547052 atatagggtactccggtttgggttagataaaatatccaccccgttaaattaatgggtgggtttgggcaaacccactaatttctggtttggtttgggttgg 42547151  T
Q  179 ataatgggttacccaa 194  Q
     || ||||||||||||    
T  42547152 gtagtgggttacccaa 42547167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 2839 - 2721
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| | | ||||| ||||| ||||||||||||||||||||| ||||| || ||||||  |||||| |||||||||||||||||||||||||  ||    
T  2839 atagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggacaaacccactaatttttgggttgggttggattgggta 2740  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||||||||||||    
T  2739 atgggttacccaacttatt 2721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 4506 - 4388
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| | | ||||| ||||| ||||||||||||||||||||| ||||| || ||||||  |||||| |||||||||||||||||||||||||  ||    
T  4506 atagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggccaaacccactaatttttgggttgggttggattgggta 4407  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||| ||||||||||    
T  4406 atgggttatccaacttatt 4388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 7e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 6011272 - 6011166
Alignment:
Q  94 ggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttaccca 193  Q
    |||||| ||||| ||||||||||||||||||||| ||||| || ||||||  |||||  |||||||||||||||||||||||||  ||||||||||||||    
T  6011272 ggtttgggtgaggtaaaataaccacccgttatattattgggtgggtttgggcaaacctactaatttttgggttgggttggattgggtaatgggttaccca 6011173  T
Q  194 acttatt 200  Q
    |||||||    
T  6011172 acttatt 6011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 23928532 - 23928382
Alignment:
Q  44 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 143  Q
    |||||||| |||||| ||||||  || ||| |||  |||||||||||||||||||| || || ||||||| |||||||||| || | ||| || ||||||    
T  23928532 tttgggttgggtttggtcaaacccaagacccgaaccatatagggtattccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgg 23928433  T
Q  144 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
      |||||| |||||||| || |||| |||| |||  || ||||||||||||    
T  23928432 gcaaacccactaattttcggtttggtttgggttgggtagtgggttacccaa 23928382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 7945700 - 7945646
Alignment:
Q  146 aaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |||||| ||| |||||||||||||||||||||  || ||||||||||||||||||    
T  7945700 aaacccactagtttttgggttgggttggattgggtagtgggttacccaacttatt 7945646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 12854199 - 12854317
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    ||||| || ||||||||  ||||| ||||||||||||||||||||  ||| | ||  |||||  |||||||||||||| |||||||  || |||||  ||    
T  12854199 ataggatactccggtttaggtgaggtaaaataaccacccgttatactatttggtggatttgggcaaacccgctaatttatgggttgaattagattggcta 12854298  T
Q  182 atgggttacccaacttatt 200  Q
    ||| ||||||| |||||||    
T  12854299 atgcgttaccctacttatt 12854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 34696286 - 34696371
Alignment:
Q  42 ggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 127  Q
    |||||||| | ||||||  ||||| ||| |||||||  ||||| | |||||||||||| ||||| ||||||  |||||||||||||    
T  34696286 ggtttgggctgggtttggccaaacctaagacctgaaccatataagatattccggtttgggtgaggtaaaatgtccacccgttatat 34696371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 28250964 - 28251068
Alignment:
Q  96 tttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaac 195  Q
    |||| ||||| ||||||||||||||||||||  ||||| || ||||||  |||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  28250964 tttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaaccctctaatttttgggttgggttggattggataatgggttgcccaac 28251063  T
Q  196 ttatt 200  Q
    |||||    
T  28251064 ttatt 28251068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 1246917 - 1246818
Alignment:
Q  101 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||||||||||||||||||||||  ||||| ||  |||||  |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  1246917 gtgagataaaataaccacccgttatactattgggtggatttgggcaaacccactaatttttgggttgggttggattgggtaatgggttacccaacttatt 1246818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 7145571 - 7145670
Alignment:
Q  101 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||||||||||||||||||||||  ||||| ||  |||||  |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  7145571 gtgagataaaataaccacccgttatactattgggtggatttgggcaaacccactaatttttgggttgggttggattgggtaatgggttacccaacttatt 7145670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 43312705 - 43312877
Alignment:
Q  28 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 127  Q
    ||||||| |||||||||||||||| |||||| ||||||  ||||||| ||  |||||  ||||| || |||||||||| |||||||||||| ||| ||||    
T  43312705 ggtgtacgtgagtcggtttgggttgggtttggtcaaacccaaaacctaaaccatataaagtatttcgatttgagtgaggtaaaataaccactcgtcatat 43312804  T
Q  128 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
     |||| |   |||| | ||||||  ||||||||| |||||||||||||||  || |||||||||||| |||||    
T  43312805 cattgtaccggtttaggtaaacctactaattttttggttgggttggattgggtagtgggttacccaaattatt 43312877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 42666692 - 42666795
Alignment:
Q  96 tttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaac 195  Q
    |||| ||||| ||||||||||||| ||||||  |||||||| ||||||  |||||| |||||||||||||||||||||||||  |||||||||||| |||    
T  42666692 tttgggtgaggtaaaataaccacc-gttataatattggatgggtttggacaaacccactaatttttgggttgggttggattgggtaatgggttacctaac 42666790  T
Q  196 ttatt 200  Q
    |||||    
T  42666791 ttatt 42666795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 32829396 - 32829514
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    ||||| || ||||||||| ||||| |||||||||||| |||||||  ||||| || ||||||  ||| || ||||||||||||||||||| |||||  ||    
T  32829396 ataggctactccggtttgggtgaggtaaaataaccactcgttatactattgggtgggtttggacaaatccactaatttttgggttgggttagattgggta 32829495  T
Q  182 atgggttacccaacttatt 200  Q
    ||||||||||| |||||||    
T  32829496 atgggttacccgacttatt 32829514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 26262234 - 26262354
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 179  Q
    ||||| |||| || |||||| ||||| |||||||| |||  ||||||| |||||||| ||||||  ||||||| |||||||||||||||||| ||||| |    
T  26262234 atataaggtactctggtttgggtgaggtaaaataatcacatgttatatcattggatgggtttgggcaaacccgttaatttttgggttgggtttgattgga 26262333  T
Q  180 taatgggttacccaacttatt 200  Q
    |||| | ||| ||||||||||    
T  26262334 taatagattatccaacttatt 26262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 17190156 - 17190012
Alignment:
Q  29 gtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatata 128  Q
    |||||| || ||||||||||||| ||||||| ||||| ||||||| |||| ||||| |||| || | |||| | ||| | ||||||||||||||||||      
T  17190156 gtgtacgtgggtcggtttgggttgggtttgaccaaacctaaaacccgaatcatataaggtactcggatttgggagaggtgaaataaccacccgttatacc 17190057  T
Q  129 attggatgagtttggttaaacccgctaatttttgggttgggttgg 173  Q
    ||||| ||  || ||  ||||||| |||||| ||||||| |||||    
T  17190056 attgggtggattcggacaaacccgttaatttatgggttgagttgg 17190012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 31964328 - 31964233
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggat 175  Q
    |||||||||| ||||||||||||||| |||||||| |||| ||||||  |||||||  | ||||  ||||| |||||||| |||||||| ||||||    
T  31964328 atatagggtactccggtttgagtgaggtaaaataatcacctgttataccattggatcggattgggcaaacctgctaatttatgggttggattggat 31964233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 14796146 - 14795996
Alignment:
Q  44 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 143  Q
    |||||||| |||||| ||||||  || ||| ||| ||||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||    
T  14796146 tttgggttgggtttggtcaaacccaagacccgaactatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgg 14796047  T
Q  144 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
      |||||| |||||||  || |||| |||| |||  || ||||||||||||    
T  14796046 gcaaacccactaatttccggtttggtttgggttgggtagtgggttacccaa 14795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 28881946 - 28882063
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    ||||| || ||||||||| ||||| |||||||| ||||||| |||  ||||| || ||||||  |||||| |||||  |||||||| |||||||||  ||    
T  28881946 ataggatactccggtttgggtgaggtaaaataatcacccgt-atactattgggtgggtttgggcaaacccactaatacttgggttgagttggattgggta 28882044  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||||||| ||||    
T  28882045 atgggttacccaacatatt 28882063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 48788595 - 48788683
Alignment:
Q  107 taaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |||||||||||||| |||||  | |||||| ||||||  ||||||||||||||     ||||||||||||| ||||||| ||||||||||||||    
T  48788595 taaaataaccacccattataccactggatgggtttgggcaaacccgctaattt-----ttgggttggattggataatggattacccaacttatt 48788683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 14805020 - 14804870
Alignment:
Q  44 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 143  Q
    |||||||| |||||| ||||||  ||  || ||| ||||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||    
T  14805020 tttgggttgggtttggtcaaacccaagtcccgaactatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgg 14804921  T
Q  144 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
      |||||| |||||||  || |||| |||| |||  || ||||||||||||    
T  14804920 gcaaacccactaatttccggtttggtttgggttgggtagtgggttacccaa 14804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 24250407 - 24250360
Alignment:
Q  153 ctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||| |||||||||||||||||| |||||| ||| ||||||||||    
T  24250407 ctaatttctgggttgggttggattgagtaatggattatccaacttatt 24250360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 50050449 - 50050370
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaattt 159  Q
    ||||||| |||||||||||| || || ||||||| |||||||||| || | ||| |||||||||  |||||| |||||||    
T  50050449 atataggatattccggtttgggttaggtaaaatatccacccgttaaattaatgggtgagtttggacaaacccactaattt 50050370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 31199985 - 31200099
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 179  Q
    ||||| |||||||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| |||||||  || |||| |||| |||      
T  31199985 atataaggtattccggtttgggttaggtaaaatatccacccgttagattaatgggtgggtttggacaaacccactaatttccggtttggtttgggttggg 31200084  T
Q  180 taatgggttacccaa 194  Q
    || ||||||||||||    
T  31200085 tagtgggttacccaa 31200099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 26624315 - 26624433
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| | |||||||  |||| |||||||| |||  ||||||  ||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  26624315 atagggtacttcggtttggatgaggtaaaataatcacgggttatactattgggtgagtttgggtaaacccactaatttttgggttgggttggattgatta 26624414  T
Q  182 atgggttacccaacttatt 200  Q
    ||||||||||| |||||||    
T  26624415 atgggttacccgacttatt 26624433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 44524531 - 44524413
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||||||  ||||| ||||| |||||||| || | ||||||  ||||  |||||||||  ||| || |||||||||||||||||||||||||  ||    
T  44524531 atagggtattctagtttgggtgaggtaaaataatcatctgttatactattgagtgagtttggacaaatccactaatttttgggttgggttggattgggta 44524432  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||| ||||||||||    
T  44524431 atgggttatccaacttatt 44524413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 32538003 - 32538103
Alignment:
Q  43 gtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttg 142  Q
    |||| |||| |||||||||||||  || |||||||  |||||||||| ||||||||||||||| ||||||  |||||| |||||| | ||| ||||||||    
T  32538003 gtttaggttgggtttgatcaaacccaagacctgaaccatatagggtactccggtttgagtgaggtaaaatgtccacccattatattaatgggtgagtttg 32538102  T
Q  143 g 143  Q
    |    
T  32538103 g 32538103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 37633216 - 37633060
Alignment:
Q  44 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 143  Q
    |||||||| ||||||| |||||  || ||| |||| |||||||||||||||||||| ||||| || |||  |||||  |||||| | ||| |||||||||    
T  37633216 tttgggttgggtttgaccaaacccaatacccgaatcatatagggtattccggtttgggtgaggtagaatgtccacctattatattaatgggtgagtttgg 37633117  T
Q  144 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
      |||||| ||| |||| || |||| || | |||  || |||||||||||| |||||    
T  37633116 acaaacccactagttttcggtttggttttggttgggtagtgggttacccaaattatt 37633060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 8804876 - 8804951
Alignment:
Q  42 ggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataacca 117  Q
    ||||| |||| ||||||| |||||| || |||| ||| ||||||||||||   |||||||||||||||||||||||    
T  8804876 ggtttaggttgggtttgaccaaactcaatacctaaatcatatagggtatttttgtttgagtgagataaaataacca 8804951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 36107066 - 36107221
Alignment:
Q  39 gtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgag 138  Q
    |||| |||||||| ||||||  |||||  || ||| |||  |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || |    
T  36107066 gtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtggg 36107165  T
Q  139 tttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
    |||||  |||||| |||||||  || |||| |||| ||| ||| ||||||||||||    
T  36107166 tttgggcaaacccactaatttccggtttggtttgggttggatagtgggttacccaa 36107221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 49105948 - 49105873
Alignment:
Q  95 gtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggt 170  Q
    ||||| ||||| ||||||||||||| ||||||  ||||| || ||||||  ||||||  |||||||||||||||||    
T  49105948 gtttgggtgaggtaaaataaccaccagttatactattgggtgggtttgggcaaacccattaatttttgggttgggt 49105873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 40210734 - 40210585
Alignment:
Q  44 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 143  Q
    |||||||| | |||| ||||||  || ||| |||| |||||||||| ||||||||| ||  | |||||||  ||||||||| || | ||| || ||||||    
T  40210734 tttgggttggatttggtcaaacccaagacccgaatcatatagggtactccggtttgggtttggtaaaatattcacccgttaaattaatgggtgggtttgg 40210635  T
Q  144 ttaaacccgctaatttttgggttgggttggattgaataatgggttaccca 193  Q
      |||||| |||||||| || |||| |||| |||  || |||||||||||    
T  40210634 gcaaacccactaattttcggtttggtttgggttgggtagtgggttaccca 40210585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 18765142 - 18765256
Alignment:
Q  86 ggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgg 185  Q
    |||| ||||||||| ||||| ||||||||||||||||||||  ||||| || ||||||  |||||| ||||||||||||||| ||| |||||| ||||||    
T  18765142 ggtactccggtttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttttgggttgagttagattgagtaatgg 18765241  T
Q  186 gttacccaacttatt 200  Q
    ||||||| |||||||    
T  18765242 gttacccgacttatt 18765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 20565446 - 20565328
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| ||| ||||| ||| | ||||||||||||||||||||  ||||| || ||||||  |||||| |||||||||||||| ||||||||||  ||    
T  20565446 atagggtactccagtttgggtggggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttttgggttaggttggattgggta 20565347  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||||||||||||    
T  20565346 atgggttacccaacttatt 20565328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 13369890 - 13369766
Alignment:
Q  76 aattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggat 175  Q
    ||||| |||||||| | ||||||| ||||  |||||||||||  |||||||  ||||| || |||||| ||||||| |||||||||||||||||||||||    
T  13369890 aattaaatagggtacttcggtttgggtgaagtaaaataaccatacgttatactattgggtgggtttggataaacccactaatttttgggttgggttggat 13369791  T
Q  176 tgaataatgggttacccaacttatt 200  Q
    ||  ||||||||| |||||||||||    
T  13369790 tgggtaatgggttgcccaacttatt 13369766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 5702603 - 5702721
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| | ||||||||||||| |||||||| || | ||||||  |||||||| |||| |  |||| | ||||||||||||||| |||||||||  ||    
T  5702603 atagggtacttcggtttgagtgaggtaaaataatcatctgttatactattggatgggtttaggcaaactcactaatttttgggttgagttggattgggta 5702702  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||||||||||||    
T  5702703 atgggttacccaacttatt 5702721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 17206343 - 17206225
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||| ||| ||| ||||| ||||| |||||||| || ||||||||  ||||  |||||||||  |||| | |||||||||||||||||||||||||  ||    
T  17206343 atagagtactccagtttgggtgaggtaaaataatcatccgttatactattgagtgagtttgggcaaactcactaatttttgggttgggttggattgggta 17206244  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||||||||||||||    
T  17206243 atgggttacccaacttatt 17206225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 20464557 - 20464458
Alignment:
Q  101 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||| ||||||||||||||||||||  ||||| ||  |||||  ||| || ||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  20464557 gtgaggtaaaataaccacccgttatactattgggtggatttgggaaaatccactaattttttggttgggttggattgagtaatgagttacccaacttatt 20464458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 36441311 - 36441425
Alignment:
Q  86 ggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgg 185  Q
    |||| ||||||||| ||||| ||||||||||||||||||||  ||||| || |||| |  |||| |  |||||||| |||||||||||||||  ||||||    
T  36441311 ggtactccggtttgggtgaggtaaaataaccacccgttatactattgggtgggtttaggcaaactcattaatttttaggttgggttggattgggtaatgg 36441410  T
Q  186 gttacccaacttatt 200  Q
     ||||||||||||||    
T  36441411 attacccaacttatt 36441425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 18890625 - 18890730
Alignment:
Q  95 gtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
    ||||| ||||| ||||||||||||||||||||  ||| | ||  |||||  ||||||  |||||||| |||||||||||||||| ||||||||||| |||    
T  18890625 gtttgggtgaggtaaaataaccacccgttatactatttggtggatttggacaaacccattaatttttcggttgggttggattgagtaatgggttactcaa 18890724  T
Q  195 cttatt 200  Q
    ||||||    
T  18890725 cttatt 18890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 24140647 - 24140538
Alignment:
Q  86 ggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgg 185  Q
    |||||| ||||||| ||||  ||||||||||| | ||||||  |||||||| ||||||| |||||| ||||||||||||     |||||||| ||||| |    
T  24140647 ggtatttcggtttgggtgaagtaaaataaccatctgttatactattggatgggtttggtcaaacccactaatttttggg-----ttggattggataattg 24140553  T
Q  186 gttacccaacttatt 200  Q
    |||||||||||||||    
T  24140552 gttacccaacttatt 24140538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 14793004 - 14793071
Alignment:
Q  92 ccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaattt 159  Q
    |||||||||| ||| |||||||||||| |||||||| ||||| || |||||| |||||||||||||||    
T  14793004 ccggtttgagcgaggtaaaataaccacacgttatatcattgggtgggtttggataaacccgctaattt 14793071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 5533821 - 5533731
Alignment:
Q  110 aataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |||||||| ||||||||| ||||| |  |||||| |||| |||||||||| |||||||| || |||||  |||||| ||||||||||||||    
T  5533821 aataaccatccgttatatcattgggtcggtttggataaatccgctaatttctgggttggtttagattgggtaatggattacccaacttatt 5533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 8423999 - 8423827
Alignment:
Q  28 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 127  Q
    ||||||| || || |||||||||| ||||||| |||||  |||||| |||  |||||| ||| ||||||||| ||||| ||||||  ||| |||||||||    
T  8423999 ggtgtacgtgggtgggtttgggttgggtttgaccaaacccaaaacccgaaccatatagagtactccggtttgggtgaggtaaaatgtccatccgttatat 8423900  T
Q  128 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
     | ||| || || |||  |||||| ||| |||| || |||| |||| ||| ||  |||||||||||| |||||    
T  8423899 tactgggtgggtctggacaaacccactagttttcggtttggtttgggttggatggtgggttacccaagttatt 8423827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 30357566 - 30357411
Alignment:
Q  39 gtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgag 138  Q
    |||| |||||||| ||||||  |||||  || ||| |||  |||||||||| ||||||||| || || ||||||| |||||||||| || | |||||| |    
T  30357566 gtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatggatggg 30357467  T
Q  139 tttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
    |||||  |||||| |||||||  || |||| |||| ||| ||  ||||||||||||    
T  30357466 tttgggcaaacccactaatttccggtttggtttgggttggatggtgggttacccaa 30357411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 17473702 - 17473787
Alignment:
Q  115 ccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||||||||| | ||| ||||||||| ||||| | |||||||| || |||| ||||||||  || |||||||||||| |||||    
T  17473702 ccacccgttatattaatgggtgagtttgggtaaactcactaattttcggtttggtttggattgggtagtgggttacccaaattatt 17473787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 39330587 - 39330685
Alignment:
Q  102 tgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |||| ||||||||||||| ||||||  |||||||| ||||||  |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  39330587 tgaggtaaaataaccacctgttatactattggatgggtttggacaaacccactaatttttgtgttggattggattggataatgggttacccaacttatt 39330685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 24617424 - 24617306
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| | ||||||| |||||||||||||||||   ||||||  ||||  || ||||||  |||||| |||||||||||||||||||||||||  ||    
T  24617424 atagggtacttcggtttgggtgagataaaataaccatttgttatactattgagtgggtttgggcaaacccactaatttttgggttgggttggattgggta 24617325  T
Q  182 atgggttacccaacttatt 200  Q
    ||||| |||||||||||||    
T  24617324 atgggctacccaacttatt 24617306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 44172800 - 44172695
Alignment:
Q  95 gtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 194  Q
    ||||| ||||| ||||||||||||  ||||||  ||||| || ||||||   | ||| |||||||||||||||||||||||||  |||||||||||||||    
T  44172800 gtttgggtgaggtaaaataaccacttgttatactattgggtgggtttgggcgagcccactaatttttgggttgggttggattgggtaatgggttacccaa 44172701  T
Q  195 cttatt 200  Q
    ||||||    
T  44172700 cttatt 44172695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 22343085 - 22342934
Alignment:
Q  41 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 140  Q
    ||||||||||| ||||||  |||||  ||||||  ||  |||||||||| ||||||||| ||||| ||||||| |||||||||| |  |||||   ||||    
T  22343085 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggccagtt 22342986  T
Q  141 tggttaaacccgctaatttttgggttgggttggattgaataatgggttaccc 192  Q
    ||| ||| ||| ||||||| ||||||||||||| |||  || ||||||||||    
T  22342985 tgggtaagcccactaatttctgggttgggttgggttgggtagtgggttaccc 22342934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 22354745 - 22354594
Alignment:
Q  41 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 140  Q
    ||||||||||| ||||||  |||||  ||||||  ||  |||||||||| ||||||||| ||||| ||||||| |||||||||| |  |||||   ||||    
T  22354745 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggccagtt 22354646  T
Q  141 tggttaaacccgctaatttttgggttgggttggattgaataatgggttaccc 192  Q
    ||| ||| ||| ||||||| ||||||||||||| |||  || ||||||||||    
T  22354645 tgggtaagcccactaatttctgggttgggttgggttgggtagtgggttaccc 22354594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 43799740 - 43799794
Alignment:
Q  146 aaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  43799740 aaacccactaatttttgggttgggttggattgggtaatgggttacccaacttatt 43799794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 23443423 - 23443306
Alignment:
Q  81 tatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaat 180  Q
    |||| |||| ||| ||||||| ||||||||||||||||  ||||||  |||| ||| ||||||  || ||| ||||||| |||||||||||||||||  |    
T  23443423 tatatggtactccagtttgagcgagataaaataaccacatgttataccattgaatgggtttgggcaagcccactaatttatgggttgggttggattgggt 23443324  T
Q  181 aatgggttacccaactta 198  Q
    ||||| ||| ||||||||    
T  23443323 aatggattatccaactta 23443306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 13248085 - 13248202
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    ||||| || ||||||| ||||||  ||||||||||  ||||||||  ||||| || ||||||  |||||| || ||||||||||| |||||||||| |||    
T  13248085 ataggatactccggttcgagtgaagtaaaataaccctccgttatactattgggtgggtttggacaaacccacttatttttgggtt-ggttggattggata 13248183  T
Q  182 atgggttacccaacttatt 200  Q
    |||| ||| ||||||||||    
T  13248184 atggattatccaacttatt 13248202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 9994764 - 9994835
Alignment:
Q  129 attggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||| |||||||||  ||| || ||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  9994764 attgggtgagtttgggcaaatccactaatttttagattgggttggattgagtaatggattacccaacttatt 9994835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 30233576 - 30233434
Alignment:
Q  28 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 127  Q
    ||||||| || ||||||||||||| ||||||| |||||  || ||| |||  ||| |||||| |||||||   ||||| |||||||| || ||||||||     
T  30233576 ggtgtacgtgggtcggtttgggttgggtttgaccaaacccaagacccgaaccatagagggtactccggttaaggtgaggtaaaataatcatccgttatac 30233477  T
Q  128 aattggatgagtttggttaaacccgctaatttttgggttgggt 170  Q
     ||||||   |||||| ||||||| |||||||| || ||||||    
T  30233476 tattggaccggtttgggtaaacccactaattttcggtttgggt 30233434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 15004164 - 15004293
Alignment:
Q  41 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 140  Q
    ||||||||||| ||||||  |||||  ||||||  ||  |||||||||| ||||||||| ||||| ||||||| |||||||||| |  |||||    |||    
T  15004164 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggctggtt 15004263  T
Q  141 tggttaaacccgctaatttttgggttgggt 170  Q
    ||| ||||||| |||||||  |||||||||    
T  15004264 tgggtaaacccactaatttccgggttgggt 15004293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 41492410 - 41492575
Alignment:
Q  39 gtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatata----attgga 134  Q
    ||||||||||||| || |||  |||||  |||||| ||| ||||||| ||| ||||||||  ||||| |||||||||||||  |||||||    |||||     
T  41492410 gtcggtttgggttggggttggccaaacccaaaacccgaactatatagtgtactccggtttaggtgaggtaaaataaccaccaattatatatactattggg 41492509  T
Q  135 tgagtttggttaaacccgctaatttttgggttgggttggattgaataa-tgggttacccaacttatt 200  Q
    || |||||| |||||||| ||| || ||||||| ||||||||   |||  |||||||||||||||||    
T  41492510 tgggtttggataaacccgttaa-ttctgggttgcgttggatttggtaacggggttacccaacttatt 41492575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 41293215 - 41293303
Alignment:
Q  112 taaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||||| |||||| |||||||| |||||   |||  ||||||||||||||||| ||  |||||  |||||| ||||||||||||||    
T  41293215 taaccacccattatattattggatgggtttgaccaaattcgctaatttttgggttgagtatgattgggtaatggattacccaacttatt 41293303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 31261149 - 31261240
Alignment:
Q  109 aaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||||||||||||||  ||||| |  ||||||  |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  31261149 aaataaccacccgttatactattgggtaggtttgggcaaacccacaaatttttgggttgggttggattggataatgggttacccaacttatt 31261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 24261192 - 24261363
Alignment:
Q  28 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 127  Q
    ||||||| || ||||||||||||| |||||| | ||||  ||||||  ||  | ||||  || ||||||||| ||||| ||||| ||||||| |||||||    
T  24261192 ggtgtacatgggtcggtttgggttgggtttggtaaaacccaaaacccaaaccacatagaatactccggtttgggtgaggtaaaacaaccaccagttatat 24261291  T
Q  128 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
     ||||| || ||||||  |||||||||||||| |||| ||||||||||||  | ||| |||||||| ||||||    
T  24261292 cattgg-tgggtttgggcaaacccgctaatttatgggctgggttggattgggttatgagttacccagcttatt 24261363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 9605949 - 9606095
Alignment:
Q  53 ggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccg 152  Q
    |||||| ||||||| ||||||  || || |||||||| || |||||| ||||| ||||||||||| | ||||||  ||||| || ||||||  ||| |      
T  9605949 ggtttggtcaaactcaaaacca-aactaaatagggtactcaggtttgggtgaggtaaaataaccatctgttatactattgggtgggtttgggcaaatcga 9606047  T
Q  153 ctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    || ||||||||||||||||||||||  |||||||||| ||||||||||    
T  9606048 ctgatttttgggttgggttggattgggtaatgggttatccaacttatt 9606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 24496420 - 24496262
Alignment:
Q  42 ggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagttt 141  Q
    |||||||||| ||||||| |||||  ||||||  ||||| |||||||| | | ||||| ||| | ||||||||||| ||||||||  |||||||| ||||    
T  24496420 ggtttgggttgggtttgaccaaacccaaaacca-aattaaatagggtacttcagtttgggtggggtaaaataaccatccgttatactattggatgggttt 24496322  T
Q  142 ggttaaacccgctaatttttggg-ttgggttggattgaataatgggttacccaacttatt 200  Q
    ||  ||||||  ||||||||||| |||||||| ||||  ||||| |||||  ||||||||    
T  24496321 ggacaaacccattaatttttgggtttgggttgaattgggtaatgagttacttaacttatt 24496262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 30125882 - 30125768
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 179  Q
    |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| ||||||| ||| |||| |||| |||      
T  30125882 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttctggtttggtttgggttggg 30125783  T
Q  180 taatgggttacccaa 194  Q
    || ||||||||||||    
T  30125782 tagtgggttacccaa 30125768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 46552300 - 46552194
Alignment:
Q  94 ggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttaccca 193  Q
    |||||| || || ||||||||||| || |||||  ||||| || ||||||  |||||  |||||||||||||||||||||||||  ||||||| ||||||    
T  46552300 ggtttgggtaaggtaaaataaccatccattataccattgggtgggtttggacaaaccaactaatttttgggttgggttggattgggtaatgggataccca 46552201  T
Q  194 acttatt 200  Q
    |||||||    
T  46552200 acttatt 46552194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 7840977 - 7840888
Alignment:
Q  111 ataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    ||||||| |||||||   ||||| || ||||||  |||||| |||| ||||||||||||||||||||  |||||||||||||||||||||    
T  7840977 ataaccatccgttattctattgggtgggtttggacaaacccactaagttttgggttgggttggattgggtaatgggttacccaacttatt 7840888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 8262546 - 8262703
Alignment:
Q  43 gtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttg 142  Q
    ||||||||| ||||||  |||||  | ||||| ||  |||||||||  ||| ||||| ||||| |||||||| || || |||||  ||||  |  |||||    
T  8262546 gtttgggttgggtttggccaaacccagaacctaaaccatatagggtgctccagtttgggtgaggtaaaataaacatccattataccattgtgttggtttg 8262645  T
Q  143 gttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
    |  ||||||| |||||| |||||||||||||||||  |||||||||||||||||||||    
T  8262646 ggcaaacccgttaatttctgggttgggttggattgggtaatgggttacccaacttatt 8262703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 41237306 - 41237188
Alignment:
Q  82 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 181  Q
    |||||||| | || |||| ||||| ||||||||||||  || |||  ||||| || ||||||  || ||| |||||||||||||||||||||||||  ||    
T  41237306 atagggtacttcgatttgggtgaggtaaaataaccacttgtcatactattgggtgggtttgggcaatcccactaatttttgggttgggttggattgggta 41237207  T
Q  182 atgggttacccaacttatt 200  Q
    |||||||| |||| |||||    
T  41237206 atgggttatccaagttatt 41237188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 45222328 - 45222500
Alignment:
Q  28 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 127  Q
    ||||||| || || |||||||||| ||||||| |||||  || ||| |||  ||||||||||  |||||||| ||||| ||||||  |||||| ||||||    
T  45222328 ggtgtacgtgggtgggtttgggttgggtttgaccaaacccaagacccgaaccatatagggtaccccggtttgggtgaggtaaaatgtccacccattatat 45222427  T
Q  128 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 200  Q
     | |||||| ||||||  |||||| ||| |||| || |||| |||| |||   | |||||||||||| |||||    
T  45222428 taatggatgggtttgggaaaacccactagttttcggtttggtttgggttgggcagtgggttacccaaattatt 45222500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 39084778 - 39084893
Alignment:
Q  79 tatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattga 178  Q
    ||||||||||| ||||||||| || || ||||||| |||||||||| || | |||||| ||||||  |||||| |||||||  || |||| |||| |||     
T  39084778 tatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatggatgggtttgggcaaacccactaatttccggtttggtttgggttgg 39084877  T
Q  179 ataatgggttacccaa 194  Q
     || ||||||||||||    
T  39084878 gtagtgggttacccaa 39084893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 44269786 - 44269937
Alignment:
Q  41 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 140  Q
    ||||||||||| ||||||  |||||  ||||||  ||  ||||| |||| ||||||||| ||||||||||||  |||||||||| |  ||||||   |||    
T  44269786 cggtttgggttgggtttggccaaacccaaaacccaaaccatataaggtactccggtttgggtgagataaaatgtccacccgttaaactattggaccggtt 44269885  T
Q  141 tggttaaacccgctaatttttgggttgggttggattgaataatgggttaccc 192  Q
    ||| ||||||| |||||||  ||||||| |||| |||  || ||||||||||    
T  44269886 tgggtaaacccactaatttccgggttggattgggttgggtagtgggttaccc 44269937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 28699354 - 28699490
Alignment:
Q  36 tgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggat 135  Q
    ||||||||||| | || ||||||| ||| ||||| | | |||| |||||||||  ||||||||| || || |||| ||||||||||||||||| | || |    
T  28699354 tgagtcggtttagtttgggtttgaccaaccttaagatccgaatcatatagggtgctccggtttgggtaaggtaaagtaaccacccgttatatattgggtt 28699453  T
Q  136 gagtttggttaaacccgctaatttttgggttgggttgg 173  Q
    | ||| || | ||||| ||||||| ||| |||||||||    
T  28699454 gggttgggct-aacccactaatttctggtttgggttgg 28699490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 4773878 - 4773992
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 179  Q
    |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| |||||||  || |||| |||| |||      
T  4773878 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggttggg 4773977  T
Q  180 taatgggttacccaa 194  Q
    || ||||||||||||    
T  4773978 tagtgggttacccaa 4773992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 396890 - 397004
Alignment:
Q  80 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 179  Q
    |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| |||||||| || |||| |||| |||      
T  396890 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggttggg 396989  T
Q  180 taatgggttacccaa 194  Q
    || ||||||||||||    
T  396990 tagtgggttacccaa 397004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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