View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5831-Insertion-3 (Length: 980)
Name: NF5831-Insertion-3
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-3 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 872; Significance: 0; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 872; E-Value: 0
Query Start/End: Original strand, 9 - 951
Target Start/End: Complemental strand, 12524 - 11580
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12524 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
12425 |
T |
|
| Q |
109 |
catggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtattggttgtttttaaat |
208 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
12424 |
catggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtattaaaaaaatagtattggttgtttttaaat |
12325 |
T |
|
| Q |
209 |
tagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtggatatatggcacctga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12324 |
tagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtggatatatggcacctga |
12225 |
T |
|
| Q |
309 |
gtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgt |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12224 |
gtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgt |
12125 |
T |
|
| Q |
409 |
gatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaagagt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12124 |
gatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaagagt |
12025 |
T |
|
| Q |
509 |
agtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12024 |
agtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaa |
11925 |
T |
|
| Q |
609 |
tgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgat |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11924 |
tgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgat |
11825 |
T |
|
| Q |
709 |
tctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtca |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11824 |
tctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtca |
11725 |
T |
|
| Q |
809 |
acggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaa |
908 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11724 |
acggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaa |
11625 |
T |
|
| Q |
909 |
ataccagaccaga-tgt-attaaatagtggtttttattttctttt |
951 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
11624 |
ataccagaccagattgtaattaaatagtggtttttattttctttt |
11580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 478 - 951
Target Start/End: Complemental strand, 4399 - 3924
Alignment:
| Q |
478 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
577 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4399 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
4300 |
T |
|
| Q |
578 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
677 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4299 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
4200 |
T |
|
| Q |
678 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4199 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
4100 |
T |
|
| Q |
778 |
ccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacc |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4099 |
ccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacc |
4000 |
T |
|
| Q |
878 |
cataatacatatatatttcatagtgttgtaaataccagaccaga-tgt-attaaatagtggtttttattttctttt |
951 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
3999 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtggtttttattttctttt |
3924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 4903 - 4452
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| | |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4903 |
accttcaccaggattctcgatttcgtgttattcatagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttgg |
4804 |
T |
|
| Q |
109 |
catggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtattggttgtttttaaat |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| | | |
|
|
| T |
4803 |
catggcaagactttttggtgttgaccaaacccaggaaa-cacaaatagaattgtgggaacttagtaagcattcaaaaaaaagtattggttgttttttatt |
4705 |
T |
|
| Q |
209 |
t--------------agtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtgga |
294 |
Q |
| |
|
| |||||||| || | | ||||||||||||||||| |||||| ||||||||||| | || |||||||||||| ||| |
|
|
| T |
4704 |
ttaatcaggaggcttagtttatgtaaataaatagaaagttgaagataattgaaaacattttgcttaac---------catcctcattgttttgtagcgga |
4614 |
T |
|
| Q |
295 |
tatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
4613 |
tatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggttcttgaaattgtaagtggtgctaaaa |
4514 |
T |
|
| Q |
395 |
acagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatactttt |
456 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4513 |
atagtagcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 824; Significance: 0; HSPs: 26)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 9 - 951
Target Start/End: Complemental strand, 6510844 - 6509900
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510844 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
6510745 |
T |
|
| Q |
109 |
catggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtattggttgtttttaaat |
208 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
6510744 |
catggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtattaaaaaaatagtattggttgtttttaaat |
6510645 |
T |
|
| Q |
209 |
tagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtggatatatggcacctga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510644 |
tagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtggatatatggcacctga |
6510545 |
T |
|
| Q |
309 |
gtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgt |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510544 |
gtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgt |
6510445 |
T |
|
| Q |
409 |
gatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaagagt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6510444 |
gatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaagagt |
6510345 |
T |
|
| Q |
509 |
agtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaa |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||| || | |||||||||||||||||||| |
|
|
| T |
6510344 |
agtatttgcatttgggtaaatttgtgcaggcatggagaaattggattgatggtactgcaacaattatcatagattctactttaaacaatgattcacgaaa |
6510245 |
T |
|
| Q |
609 |
tgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgat |
708 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510244 |
tgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgat |
6510145 |
T |
|
| Q |
709 |
tctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtca |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510144 |
tctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtca |
6510045 |
T |
|
| Q |
809 |
acggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaa |
908 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510044 |
acggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaa |
6509945 |
T |
|
| Q |
909 |
ataccagaccaga-tgt-attaaatagtggtttttattttctttt |
951 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
6509944 |
ataccagaccagattgtaattaaatagtggtttttattttctttt |
6509900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 279 - 753
Target Start/End: Complemental strand, 6497591 - 6497114
Alignment:
| Q |
279 |
attgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaatt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| || || ||||| || ||||| |||||||||||| | ||||| |
|
|
| T |
6497591 |
attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcggatgtattcagtttcggtatattggttcttgaaatc |
6497492 |
T |
|
| Q |
379 |
gtaagtggtgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtc------atatctt |
472 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||| || ||||| || ||||||||||||||||||||| ||||| || |||| || |
|
|
| T |
6497491 |
gtaagtggttcaaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatactttttatgtcatcgtcatcatatatt |
6497392 |
T |
|
| Q |
473 |
tcatctttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaa |
572 |
Q |
| |
|
|||| | ||||||| | ||||||||||| || | ||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
6497391 |
tcatgt--agaagtgta-ttatatctaacctagtattttatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgcaacaag |
6497295 |
T |
|
| Q |
573 |
tatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggcca |
672 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497294 |
tatcatagatcccacgttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggcca |
6497195 |
T |
|
| Q |
673 |
agcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggat |
753 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497194 |
agcatggctactgtagtagtgatgctaaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggat |
6497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 6503224 - 6502773
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| | |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6503224 |
accttcaccaggattctcgatttcgtgttattcatagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttgg |
6503125 |
T |
|
| Q |
109 |
catggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtattggttgtttttaaat |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | | |
|
|
| T |
6503124 |
catggcaagactttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagcattcaaaaaa-agtattggttgttttttatt |
6503026 |
T |
|
| Q |
209 |
t--------------agtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtgga |
294 |
Q |
| |
|
| |||||||| || | | ||||||||||||||||| |||||| |||||||||| | | || |||||||||||| ||| |
|
|
| T |
6503025 |
ttaatcaggaggcttagtttatgtaaataaatagaaagttgaagataattgaaaacattttgctta---------accatcctcattgttttgtagcgga |
6502935 |
T |
|
| Q |
295 |
tatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
6502934 |
tatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggttcttgaaattgtaagtggtgctaaaa |
6502835 |
T |
|
| Q |
395 |
acagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatactttt |
456 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6502834 |
atagtagcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
6502773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 478 - 731
Target Start/End: Complemental strand, 6502721 - 6502468
Alignment:
| Q |
478 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
577 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6502721 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
6502622 |
T |
|
| Q |
578 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
677 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| |
|
|
| T |
6502621 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccat |
6502522 |
T |
|
| Q |
678 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgccttt |
731 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
6502521 |
ggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 527 - 749
Target Start/End: Complemental strand, 6514690 - 6514468
Alignment:
| Q |
527 |
aatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtat |
626 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||| |||| |||||| ||| | |||||||| |
|
|
| T |
6514690 |
aatttgtgtaggcatggagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtat |
6514591 |
T |
|
| Q |
627 |
ccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatg |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6514590 |
ccatattggattactttgtgttcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaatt |
6514491 |
T |
|
| Q |
727 |
cctttggaacctgcatttcatat |
749 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
6514490 |
cctttgcaacctgcatttcatat |
6514468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 214 - 473
Target Start/End: Complemental strand, 6515039 - 6514779
Alignment:
| Q |
214 |
tatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactc-ccatattgttttgtagtggatatatggcacctgagtat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
6515039 |
tatgcaagttagtagaaagttgaagataagtaaaaatatttttcttaatttagctgaactatccatattgttatgtagtgggtatatggcaccagagtat |
6514940 |
T |
|
| Q |
313 |
gtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgtgatg |
412 |
Q |
| |
|
| | ||| ||||| |||||| |||||| ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
6514939 |
gcgaggcatggacaattttcaacaaaatcagatgtctttagttttggtatattagttcttgaaattgtaagtggtacaaaaaatagttacatccgtgatg |
6514840 |
T |
|
| Q |
413 |
gggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatcttt |
473 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||||| |
|
|
| T |
6514839 |
gggagaatacggaatatctctcgagctttgtaagtcataattgtcatgcaatcatatcttt |
6514779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 6515226 - 6515066
Alignment:
| Q |
17 |
gaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaa |
116 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6515226 |
gaggattctcgagtgcgtgttattcatcgtgatctcaaagcaagcaatattctcttagataaacggatgaatcctaagatagctgattttggcatggcaa |
6515127 |
T |
|
| Q |
117 |
ggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
177 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6515126 |
gactttttggtgtggaccaaacccaggaaaacacaaatagaattgtgggaacctagtaagt |
6515066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 6497890 - 6497722
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
6497890 |
accttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttgg |
6497791 |
T |
|
| Q |
109 |
catggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
177 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
6497790 |
catggcaagactatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagt |
6497722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 6525270 - 6525438
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
6525270 |
accttcatgaggattctcggctgcgtattattcatcgtgatctcaaagcaagcaatattctcttagatgaagagatgaatcctaagatagcagattttgg |
6525369 |
T |
|
| Q |
109 |
catggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
177 |
Q |
| |
|
|||||| || || |||| ||| |||||||| |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
6525370 |
catggctagactgtttgatgtggaccaaactcaggaaaatacaaacagaattgtgggaacctagtaagt |
6525438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 588 - 720
Target Start/End: Original strand, 6525879 - 6526011
Alignment:
| Q |
588 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
687 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| || |
|
|
| T |
6525879 |
attaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctatt |
6525978 |
T |
|
| Q |
688 |
gtagtgatgcttaatagtgattctgttactctc |
720 |
Q |
| |
|
||| | |||||||||||| ||||| | |||||| |
|
|
| T |
6525979 |
gtactaatgcttaatagtcattctctcactctc |
6526011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 47770964 - 47771070
Alignment:
| Q |
11 |
cttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggca |
110 |
Q |
| |
|
||||| ||||||||||| ||||| |||| || |||||| ||||||||||||| |||||||| || || |||||||||||||||||| |||||||||| |
|
|
| T |
47770964 |
cttcatgaggattctcgcctacgaattatacaccgtgatatcaaagcaagcaacattctcttagacgatgagatgaatcctaagatatctgattttggat |
47771063 |
T |
|
| Q |
111 |
tggcaag |
117 |
Q |
| |
|
||||||| |
|
|
| T |
47771064 |
tggcaag |
47771070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 588 - 730
Target Start/End: Original strand, 47771525 - 47771667
Alignment:
| Q |
588 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
687 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47771525 |
attaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgtt |
47771624 |
T |
|
| Q |
688 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
730 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47771625 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47771667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 289 - 387
Target Start/End: Original strand, 47775329 - 47775427
Alignment:
| Q |
289 |
agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggt |
387 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||| |||||||| |||||||||||||| || |||||||| | || ||| |||||||| |
|
|
| T |
47775329 |
agtggatatatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagtttcggagtattggttcttgagattttaagtggt |
47775427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 588 - 730
Target Start/End: Original strand, 47775677 - 47775819
Alignment:
| Q |
588 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
687 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47775677 |
attaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgtt |
47775776 |
T |
|
| Q |
688 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
730 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47775777 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47775819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 6525528 - 6525657
Alignment:
| Q |
284 |
tttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaag |
383 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||| ||||| |||||||| || || ||||| |||||||||||| ||||| || | || ||| |||| |
|
|
| T |
6525528 |
tttgcagtggatatatggcaccggagtatgcaatgcatggacaattttcagtgaagtcagatgtatttagttttggtgtattgattcttgagattataag |
6525627 |
T |
|
| Q |
384 |
tggtgcaaaaaacagtggcattcgtgatgg |
413 |
Q |
| |
|
||| |||||||||||||||||| |||| |
|
|
| T |
6525628 |
tggccacaaaaacagtggcattcgtcatgg |
6525657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 47711722 - 47711620
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
||||||| |||||||||| ||| ||| |||| ||||||||||| |||||||| || ||||||||||||||| || |||||||||| ||| | || ||||| |
|
|
| T |
47711722 |
accttcatgaggattctcaacttcgtattatacatcgtgatcttaaagcaagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttgg |
47711623 |
T |
|
| Q |
109 |
cat |
111 |
Q |
| |
|
||| |
|
|
| T |
47711622 |
cat |
47711620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 47744237 - 47744138
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
||||||| ||||||||| ||| ||| |||| ||||||||||| |||||||| || ||||||||||| ||| || |||||||||| ||| |||||||||| |
|
|
| T |
47744237 |
accttcatcaggattctcaacttcgtattatacatcgtgatcttaaagcaagtaacattctcttggacgaaaagttgaatcctaaaatatctgattttgg |
47744138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 47771234 - 47771329
Alignment:
| Q |
292 |
ggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggt |
387 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||| | || ||| |||||||| |
|
|
| T |
47771234 |
ggatacatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagctttggggtattggttcttgagattataagtggt |
47771329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 47758620 - 47758515
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||| ||||||||||| ||||| || || |||||||| || ||| || |||||||||| ||| | |||||||| |
|
|
| T |
47758620 |
accttcacgaggattctcaacttcgtattatacatcgtgatcttaaagcgagtaacattctcttagacgaaaagttgaatcctaaaatatcagattttgg |
47758521 |
T |
|
| Q |
109 |
catggc |
114 |
Q |
| |
|
||||| |
|
|
| T |
47758520 |
aatggc |
47758515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 47701443 - 47701359
Alignment:
| Q |
36 |
ttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaaggct |
120 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||||||||||||| | ||||||||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
47701443 |
ttatacatcgtgatcttaaagcaagtaacattctcttggatgaaaaaatgaatcctaaaatatcagattttggtatggccaggct |
47701359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 47774854 - 47775020
Alignment:
| Q |
11 |
cttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggca |
110 |
Q |
| |
|
||||| ||||||||||| || || |||| || |||||||||||||| |||||||||||||| || || | |||||||||||| ||| | |||||||| |
|
|
| T |
47774854 |
cttcatgaggattctcgcctccgcattatacaccgtgatctcaaagctagcaatattctcttagacgacgggatgaatcctaaaatatccgattttggat |
47774953 |
T |
|
| Q |
111 |
tggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
177 |
Q |
| |
|
|||| || | |||| | |||| ||||| || | ||| |||| || |||||| ||||| |||||||| |
|
|
| T |
47774954 |
tggcgagattgtttgttattgatcaaactcaaggaaatacaagtaaaattgttggaacctagtaagt |
47775020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 47743771 - 47743674
Alignment:
| Q |
289 |
agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtgg |
386 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| | ||||| |||||||| ||||| |||||||||||| || | ||||| || ||| ||||||| |
|
|
| T |
47743771 |
agtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttggtgtactagttttggagattataagtgg |
47743674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 47758172 - 47758075
Alignment:
| Q |
289 |
agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtgg |
386 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| | ||||| |||||||| ||||| |||||||||||| || | ||||| || ||| ||||||| |
|
|
| T |
47758172 |
agtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttggtgtactagttttggagattataagtgg |
47758075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 47640635 - 47640715
Alignment:
| Q |
36 |
ttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaa |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| || |||||| | ||||| || ||||| | |||||||| ||||||| |
|
|
| T |
47640635 |
ttattcatcgtgatctcaaagccagcaatgttctattagatgaaaatatgaacccaaagatttcagattttgggatggcaa |
47640715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 386
Target Start/End: Complemental strand, 47711296 - 47711197
Alignment:
| Q |
287 |
gtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtgg |
386 |
Q |
| |
|
|||||||||||||||| || |||||||||| | ||| | ||||| |||||||| ||||| ||||||||||| |||| ||||| || ||| ||||||| |
|
|
| T |
47711296 |
gtagtggatatatggctcccgagtatgtaaggtttggagaattttcggtaaaatcagatgtttttagttttggagtattagttttggagattataagtgg |
47711197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 47701015 - 47700942
Alignment:
| Q |
286 |
tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttgg |
359 |
Q |
| |
|
||||||||||||||||||| || |||| |||| ||||| |||||||| ||||| ||||| ||||||||||| |
|
|
| T |
47701015 |
tgtagtggatatatggcactcgaatatgcaatgtttggacaattttcagtcaaatcggatgtttttagttttgg |
47700942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 28829113 - 28828947
Alignment:
| Q |
11 |
cttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggca |
110 |
Q |
| |
|
||||| || |||||||||||||| |||| || |||||||| ||||||||||| |||||||| |||| ||| |||||| |||||||||| |||||||||| |
|
|
| T |
28829113 |
cttcatgaagattctcgactacgcattatacaccgtgatcttaaagcaagcaacattctcttagatggagacatgaatgctaagatagcagattttggca |
28829014 |
T |
|
| Q |
111 |
tggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
177 |
Q |
| |
|
||||||| || || ||| || ||||| || | ||| |||| ||||||||| ||||| |||||||| |
|
|
| T |
28829013 |
tggcaagactaattcttgtggatcaaacacaagcaaatacaagtagaattgttggaacctagtaagt |
28828947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 28854774 - 28854608
Alignment:
| Q |
11 |
cttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggca |
110 |
Q |
| |
|
||||| ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||| |||||| | |||||| |||||||| | ||||| |||| |
|
|
| T |
28854774 |
cttcatgaggattctcgactacgcattatacaccgtgatctcaaagcaggcaatattctcttagatgaaaacatgaatgctaagatatcagatttcggca |
28854675 |
T |
|
| Q |
111 |
tggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt |
177 |
Q |
| |
|
||||||| || || ||| || ||||| || ||||| |||| ||| |||| |||||||||||||| |
|
|
| T |
28854674 |
tggcaagactaattcttgtggatcaaacacaagaaaatacaagtagtgttgttggaacttagtaagt |
28854608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 27368765 - 27368659
Alignment:
| Q |
11 |
cttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggca |
110 |
Q |
| |
|
||||||||||||||||| | || |||| || |||||||||||||||||||||||||| || || ||||||||||||||||||||| | |||||||| |
|
|
| T |
27368765 |
cttcacgaggattctcgcttgcgcattatacaccgtgatctcaaagcaagcaatattcttttagacgaagagatgaatcctaagatatccgattttggat |
27368666 |
T |
|
| Q |
111 |
tggcaag |
117 |
Q |
| |
|
||||||| |
|
|
| T |
27368665 |
tggcaag |
27368659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 28859863 - 28859789
Alignment:
| Q |
286 |
tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||| |
|
|
| T |
28859863 |
tgtagcggatatatggcacctgagtatgtaatgcatggagaattttcagtgaaatcagatgtctttagttttggt |
28859789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 28860134 - 28860026
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
||||||| |||||||||||||| ||| |||| || || ||||||||||||||||| |||||| | || ||||| |||||| ||||||| | |||||||| |
|
|
| T |
28860134 |
accttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttgg |
28860035 |
T |
|
| Q |
109 |
catggcaag |
117 |
Q |
| |
|
||||||||| |
|
|
| T |
28860034 |
catggcaag |
28860026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 28854476 - 28854402
Alignment:
| Q |
286 |
tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt |
360 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||| |
|
|
| T |
28854476 |
tgtagcgggtatatggcacctgagtatgtaatgcatggagaattttcagtaaaatcagatgtcttcagttttggt |
28854402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 28828775 - 28828701
Alignment:
| Q |
286 |
tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt |
360 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| | ||||| || ||||| ||||||||| |||||||| |
|
|
| T |
28828775 |
tgtagtggatacatggcacctgagtatgtaatgcatggagaattttcggtgaaatcagatgtctttggttttggt |
28828701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 28874666 - 28874533
Alignment:
| Q |
47 |
gatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaa |
146 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||| ||||||| | ||||||||||||||||| ||| || ||| || |||||||| | || |
|
|
| T |
28874666 |
gatctcaaagcaagcaacattctcttagacgaagacgtgaatgctaagatctcagattttggcatggcaagacttattcttgtggatcaaacccaagcaa |
28874567 |
T |
|
| Q |
147 |
acacaaatagaattgtgggaacttagtaagtgtt |
180 |
Q |
| |
|
| |||| |||| |||| | ||| ||||||||||| |
|
|
| T |
28874566 |
atacaagtagagttgttgaaacctagtaagtgtt |
28874533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 27368414 - 27368344
Alignment:
| Q |
289 |
agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttgg |
359 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| | ||||| |||||||| ||||||| ||||||||| |
|
|
| T |
27368414 |
agtggatatatggcacctgagtatgcgatgcatggagaattttcggtaaaatcagatgtctatagttttgg |
27368344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 28874444 - 28874400
Alignment:
| Q |
286 |
tgtagtggatatatggcacctgagtatgtaatgcacggacagttt |
330 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
28874444 |
tgtagcggatatatggcacctgagtatgtaatgcatggagagttt |
28874400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 670 - 740
Target Start/End: Complemental strand, 27367975 - 27367905
Alignment:
| Q |
670 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgc |
740 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||| ||||| || ||||| |||| |||| | ||||||| |
|
|
| T |
27367975 |
ccaaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgc |
27367905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 665
Target Start/End: Complemental strand, 28843869 - 28843804
Alignment:
| Q |
600 |
ttcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctag |
665 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
28843869 |
ttcaagaaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctag |
28843804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 11224791 - 11224890
Alignment:
| Q |
9 |
accttcacgaggattctcgactacgtgttattcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttgg |
108 |
Q |
| |
|
||||||| ||||||||| ||| ||| |||| ||||||||||| |||||||| || ||||||||||| ||| || |||||||||| ||| |||||||||| |
|
|
| T |
11224791 |
accttcatcaggattctcaacttcgtattatacatcgtgatcttaaagcaagtaacattctcttggacgaaaagttgaatcctaaaatatctgattttgg |
11224890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 11225257 - 11225354
Alignment:
| Q |
289 |
agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtgg |
386 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| | ||||| |||||||| ||||| |||||||||||| || | ||||| || ||| ||||||| |
|
|
| T |
11225257 |
agtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttggtgtactagttttggagattataagtgg |
11225354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 3094891 - 3094956
Alignment:
| Q |
53 |
aaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaagg |
118 |
Q |
| |
|
|||||||| ||| ||||||| ||| ||||||||||||| || ||| |||||||||| |||||||| |
|
|
| T |
3094891 |
aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagg |
3094956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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