View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5831-Insertion-4 (Length: 846)
Name: NF5831-Insertion-4
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 272 - 794
Target Start/End: Original strand, 44499085 - 44499604
Alignment:
| Q |
272 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44499085 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggcggcgctgaagggat |
44499184 |
T |
|
| Q |
372 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
44499185 |
gggcgaagactataggaatggtggtggttgcatgacggcggcgtggcgcaacggagaacgaccctttcgtggaagggagattagttttgaagagaaaatt |
44499284 |
T |
|
| Q |
472 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgatcctcctccgtaactgctcagattcgcacctctctcctcc |
571 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44499285 |
gatggacagattcgcacagatgacctttcttctcctttcggcgttggttttgctctgtt---ctcctccgtaactgctcagattcgcacctctctcctcc |
44499381 |
T |
|
| Q |
572 |
gattgttctccaatttcgttcgattctccagatcttgaagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgag |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
44499382 |
gattgttctccaatttcgttcgattctccagatcttgaagcttacctttctagcttttcactgcgcaggttttatcagtttcttctctttgtttgttcag |
44499481 |
T |
|
| Q |
672 |
cgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatg |
771 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44499482 |
cgtggtttctcttcttgcattgaaggttttatggcgttgctttgtagtcctgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatg |
44499581 |
T |
|
| Q |
772 |
aaggaggatgagaagacaaaagg |
794 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44499582 |
aaggaggatgagaagacaaaagg |
44499604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 44498851 - 44499016
Alignment:
| Q |
11 |
aattcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaatt |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498851 |
aattcatctcaattttctctgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaatt |
44498950 |
T |
|
| Q |
111 |
gattttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaac |
176 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498951 |
gattttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaac |
44499016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 787
Target Start/End: Complemental strand, 39057113 - 39057072
Alignment:
| Q |
746 |
ggttcggtcttgttgttgtaaaaatgaaggaggatgagaaga |
787 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
39057113 |
ggttcggtcttgttgtcgtgaaaatgaaggaggaagagaaga |
39057072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 272 - 750
Target Start/End: Complemental strand, 24192119 - 24191645
Alignment:
| Q |
272 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
24192119 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagataagaacagaggtgcagggcgacgctgaagggat |
24192020 |
T |
|
| Q |
372 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
471 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24192019 |
gggcgaaaactataggaatggtggtggt-gcatgacggcggcgtggcgcaacggagaacgaccctttcgtggaagggagatcagttttgaagagaaaatt |
24191921 |
T |
|
| Q |
472 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgatcctcctccgtaactgctcagattcgcacctctctcctcc |
571 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24191920 |
gatggacagattcgcacaggagacctttcttctccttccggcgttggttttgctcc---attctcctccgtaactgcttagattcgcacctctctcctcc |
24191824 |
T |
|
| Q |
572 |
gattgttctccaatttcgttcgattctccagatcttgaagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgag |
671 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
24191823 |
gattgttctccaatttcggtcgattctccagatcttgaagcttacctttctagcttttcactgcgcaggttttatcagtttcttctctttgtttgttcag |
24191724 |
T |
|
| Q |
672 |
cgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttccggttc |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24191723 |
cgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttccggttc |
24191645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 24192376 - 24192211
Alignment:
| Q |
12 |
attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24192376 |
attcatctcaattttctctgtcaacatgattctgagttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
24192277 |
T |
|
| Q |
112 |
attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca |
177 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24192276 |
attttcattctcgtcaatgttgatacccatttaactttcttttaattataccacaaggctaaaaca |
24192211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 272 - 794
Target Start/End: Original strand, 44375835 - 44376354
Alignment:
| Q |
272 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
371 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
44375835 |
aaacattcaatacaatagtaaccagaaacaacagagtatcaaatccaatttatgaacaaaccaagacaagaacagaggtgcagggccgcgctaaagggat |
44375934 |
T |
|
| Q |
372 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
471 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
44375935 |
gggcgaagactatagggatggtggtggttgcatgacggcggggtgacgcgacggagaacgaccctttcgtagaagggagatcagttttgaagagaaaatt |
44376034 |
T |
|
| Q |
472 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgatcctcctccgtaactgctcagattcgcacctctctcctcc |
571 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44376035 |
gatcgacatattcgcacaggtgacctttcttctccttccggcgttggttttgctccg---ttctcctccgtaactgctcagattcgcacctctctcctcc |
44376131 |
T |
|
| Q |
572 |
gattgttctccaatttcgttcgattctccagatcttgaagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgag |
671 |
Q |
| |
|
|| ||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||| ||| |||||||||||||| ||||||||| | | ||| || |
|
|
| T |
44376132 |
gactgttctccaatttcggtcgattctccggatctcgaagcttacctttctggcttttccctgcgcaggttttatcagcttcttctctctatctgtccag |
44376231 |
T |
|
| Q |
672 |
cgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatg |
771 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44376232 |
cgtggtttctcttcatgctttgaaggttttatggcgttgctttgtagtcttgctctgttcgtgaggttcgttccggttcggtcttgttgtcgtaaaaatg |
44376331 |
T |
|
| Q |
772 |
aaggaggatgagaagacaaaagg |
794 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
44376332 |
aaggaggatgagaaaacaaaagg |
44376354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 272 - 794
Target Start/End: Original strand, 44384702 - 44385221
Alignment:
| Q |
272 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
371 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
44384702 |
aaacattcaatacaatagtaaccagaaacaacagagtatcaaatccaatttatgaacaaaccaagacaagaacagaggtgcagggccgcgctaaagggat |
44384801 |
T |
|
| Q |
372 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
471 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
44384802 |
gggcgaagactatagggatggtggtggttgcatgacggcggggtgacgcgacggagaacgaccctttcgtagaagggagatcagttttgaagagaaaatt |
44384901 |
T |
|
| Q |
472 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgatcctcctccgtaactgctcagattcgcacctctctcctcc |
571 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384902 |
gatcgacatattcgcacaggtgacctttcttctccttccggcgttggttttgctccg---ttctcctccgtaactgctcagattcgcacctctctcctcc |
44384998 |
T |
|
| Q |
572 |
gattgttctccaatttcgttcgattctccagatcttgaagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgag |
671 |
Q |
| |
|
|| ||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||| ||| |||||||||||||| ||||||||| | | ||| || |
|
|
| T |
44384999 |
gactgttctccaatttcggtcgattctccggatctcgaagcttacctttctggcttttccctgcgcaggttttatcagcttcttctctctatctgtccag |
44385098 |
T |
|
| Q |
672 |
cgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatg |
771 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44385099 |
cgtggtttctcttcatgctttgaaggttttatggcgttgctttgtagtcttgctctgttcgtgaggttcgttccggttcggtcttgttgtcgtaaaaatg |
44385198 |
T |
|
| Q |
772 |
aaggaggatgagaagacaaaagg |
794 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
44385199 |
aaggaggatgagaaaacaaaagg |
44385221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 44375578 - 44375743
Alignment:
| Q |
12 |
attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
111 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44375578 |
attcatctcaattttctatgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaacatcataacccattgaattg |
44375677 |
T |
|
| Q |
112 |
attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375678 |
attttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaaca |
44375743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 44384445 - 44384610
Alignment:
| Q |
12 |
attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
111 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44384445 |
attcatctcaattttctatgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaacatcataacccattgaattg |
44384544 |
T |
|
| Q |
112 |
attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384545 |
attttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaaca |
44384610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 19239212 - 19239127
Alignment:
| Q |
73 |
tagagaaaataatttagaaaatcataacccattgaattga----ttttcattctcgtcaatatcgatacccatttaactttctttt |
154 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
19239212 |
tagagaagataatttagaaaatcataacccattaaattgaatggatttcattctcatcaatgtcaatacccatttaactttctttt |
19239127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 744
Target Start/End: Original strand, 27184268 - 27184348
Alignment:
| Q |
664 |
ttgttgagcgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttc |
744 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| ||||||||||||| || |||| ||| |||||||||||| |
|
|
| T |
27184268 |
ttgtcgagcgtggtttctcttctttctttgaaggttttcccatgttgctttgtagtatttctccattcatgaggttcgttc |
27184348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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