View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831-Insertion-8 (Length: 439)
Name: NF5831-Insertion-8
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 35019866 - 35019588
Alignment:
| Q |
8 |
aagcatatccactaaaatttccgtacatacgtaagttctacacataaaaaccaagttctactcaccgatagtaaatttagtactatttagtgattacttt |
107 |
Q |
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| T |
35019866 |
aagcatatccactaaaatttccgtacatacgtaagttctacacatacaaaccaagttctactgaccgatagtaaatttagtactatttagtgattacttt |
35019767 |
T |
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| Q |
108 |
ccttgccaacaggatggaactaactattttatttgtttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttctc |
207 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35019766 |
ccttgccaacagaatggaactaactattttatttatttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttct- |
35019668 |
T |
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| Q |
208 |
atacatagggatatatgcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact |
290 |
Q |
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| T |
35019667 |
---catagggatatatgcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact |
35019588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 60 - 290
Target Start/End: Complemental strand, 35029302 - 35029078
Alignment:
| Q |
60 |
aagttctactcaccgatagtaaatttagtactatttagtgattactttccttgccaacaggatggaactaactattttatttgtttttgaataagttagt |
159 |
Q |
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| T |
35029302 |
aagttctactcaccgatggtaaatttagtactatttagtgattactttccttgccaacagaatggaactaactattttatttgtttttgaataagttagt |
35029203 |
T |
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| Q |
160 |
gaaaccaactaggttgcacaatattttgtagtattctctgtctttctcatacatagggatatatgcatcaggtccacatttttcatgatacaccaaatct |
259 |
Q |
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| T |
35029202 |
gaaaccaactaggttgcacaatattttgcagtattctctgtctttct----cataggg--atatgcatcaggtccacatttttaatgatacaccaaatct |
35029109 |
T |
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| Q |
260 |
taaaaatgaaagaacgtaattaactctcact |
290 |
Q |
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||||||||||| ||| ||||||||||||||| |
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| T |
35029108 |
taaaaatgaaataacttaattaactctcact |
35029078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 332 - 439
Target Start/End: Complemental strand, 35019546 - 35019439
Alignment:
| Q |
332 |
ttgtagcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac |
431 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35019546 |
ttgtggcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac |
35019447 |
T |
|
| Q |
432 |
tccatatc |
439 |
Q |
| |
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|||||||| |
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| T |
35019446 |
tccatatc |
35019439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 35033152 - 35033221
Alignment:
| Q |
370 |
atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
439 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35033152 |
atggatgctcctcctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
35033221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 35008895 - 35008948
Alignment:
| Q |
386 |
ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
439 |
Q |
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| T |
35008895 |
ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatc |
35008948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 35037038 - 35036985
Alignment:
| Q |
386 |
ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
439 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35037038 |
ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatc |
35036985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 34998980 - 34998928
Alignment:
| Q |
384 |
tcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccat |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34998980 |
tcctttgcacatagcaatgtttccatggtttgctatgggacactcaactccat |
34998928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 35026156 - 35026212
Alignment:
| Q |
383 |
ctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
35026156 |
ctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatc |
35026212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 36288442 - 36288500
Alignment:
| Q |
381 |
ttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
439 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||| ||| |||||||| |
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| T |
36288442 |
ttcttctttgcacatagcaatgtctccatggtttgcaatgggacacctaattccatatc |
36288500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 35012482 - 35012413
Alignment:
| Q |
370 |
atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatc |
439 |
Q |
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|||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| || || ||||||| |
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| T |
35012482 |
atggatgctcttcctcctatgcatatatcaatgtttccatggtttgctatgggacatttcaccccatatc |
35012413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 30595333 - 30595279
Alignment:
| Q |
382 |
tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccat |
436 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||| ||| |||||||| |
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| T |
30595333 |
tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccat |
30595279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 30612681 - 30612627
Alignment:
| Q |
382 |
tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccat |
436 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||||| ||| |||||||| |
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| T |
30612681 |
tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccat |
30612627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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