View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831-Insertion-9 (Length: 336)
Name: NF5831-Insertion-9
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 1172288 - 1171956
Alignment:
| Q |
8 |
aaacttgaaaggaacattttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatgcaagtgatgatgtgaaatgaatctg |
107 |
Q |
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| T |
1172288 |
aaacttgaaaggaacattttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatgcaagtgatgatgttaaatgaatctg |
1172189 |
T |
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| Q |
108 |
attctacaatcaactt----tagaaacaacatatcctttgcaaattccaaccccttaggtaaagccaaaccctcagccacatttgaatctggcagtgcca |
203 |
Q |
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| T |
1172188 |
attctacaatcaacttaatttagaaacaacatatcctttgcaaattccaaccccttaagtaaagccaaaccttcagctacatttgaatctggcagtgcca |
1172089 |
T |
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| Q |
204 |
atatgcaccagcactgcgctgcaacaacgacaccttctgtgtctcggataaccgctgctaaatccccacttcccgtcactattcggtccagctgcatcta |
303 |
Q |
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| T |
1172088 |
atatgcaccagcactgcgctgcaacaacgacgccttctgtgtttcggataaccgctgctaaatccccacttcccgtcactattcggtccagctgcatcta |
1171989 |
T |
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| Q |
304 |
cattcatcttgaaagaatttcctataggtggag |
336 |
Q |
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| T |
1171988 |
cattcatcttgaaagaatttcctataggtggag |
1171956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 334
Target Start/End: Original strand, 24703845 - 24704151
Alignment:
| Q |
26 |
ttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatgcaagtgatgatgtgaaatgaatctgattctacaatcaacttta |
125 |
Q |
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| T |
24703845 |
ttgcagtcttccacgattgatcccaaatagaactgttggtgttaagtctcattgatggaggtgatcacattagatgaatctaactcaacaatcagcttta |
24703944 |
T |
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| Q |
126 |
gaaacaacatatcctttgcaaattccaaccccttaggtaaagccaaaccctcagccacatttgaatctggcagtgccaatatgcaccagcactgcgctgc |
225 |
Q |
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| T |
24703945 |
gaaacaacatatcctttgcaaattccaatcccttaagcaat-ccaaaccttctgccatatctgactcttgcgacgccaatatgcaacagcacttcactgc |
24704043 |
T |
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| Q |
226 |
aacaacgacaccttctgtgtctcggataaccgctgctaaatccccacttcccgtcactattcggtccagctgcatctacattcatcttgaaagaatttcc |
325 |
Q |
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| T |
24704044 |
aacaaccataccttctgtgtatcgaataaccgctgct-aattcccatttttcgtcactattctgaccagctacgtccacattcaacttgaaagaattacc |
24704142 |
T |
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| Q |
326 |
tataggtgg |
334 |
Q |
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| T |
24704143 |
tacaggtgg |
24704151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 14930457 - 14930531
Alignment:
| Q |
8 |
aaacttgaaaggaacattttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatg |
82 |
Q |
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|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14930457 |
aaacttgaaatgaaccttttgcggtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatg |
14930531 |
T |
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