View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_high_10 (Length: 431)
Name: NF5831_high_10
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 3908283 - 3908688
Alignment:
| Q |
19 |
gttgaatcgtaagaaaaaccagaaaccaaccaatagcagtagcaaccggtttttgttttgttatttttgattataaatatggcacgtctctgtttagaaa |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3908283 |
gttgcatcgtaagaaaaaccagaaaccaaccaatagcagtagcaaccggtttttgttttcttatttttgattataaatatggcacgtctctgtttagaaa |
3908382 |
T |
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| Q |
119 |
acgcacactcaaataaaaactgagagatggagcaagaaagtggagatggtggaagaagaggtgagatgagtaagcttgttcaagctcatcctcaacctca |
218 |
Q |
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| T |
3908383 |
acgcacactcaaataaaaactgagagatggagcaagaaagtggagatggtggaagaagaggtgagatgagtaagcttgttcaagctcatcctcaacctca |
3908482 |
T |
|
| Q |
219 |
gaagtgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtac |
318 |
Q |
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| T |
3908483 |
gaagtgtcctaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctatctcagcctcgtttcttctgcaaaacatgcagaaggtac |
3908582 |
T |
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| Q |
319 |
tggactcaaggtggaacattgagaaatgttcctattggtggtggttgtcgtaagggaaagaaagccaaaactccatcatcctcaacaccatcaagtaatt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3908583 |
tggactcaaggtggaacattgagaaatgttcctattggtggtggttgtcgtaagggaaagaaatccaaaactccatcatcctcaacaccatcaagtaatt |
3908682 |
T |
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| Q |
419 |
cttctc |
424 |
Q |
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|||||| |
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| T |
3908683 |
cttctc |
3908688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 39741064 - 39741183
Alignment:
| Q |
243 |
caacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactggactcaaggtggaacattgaga |
342 |
Q |
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| T |
39741064 |
caacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagg |
39741163 |
T |
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| Q |
343 |
aatgttcctattggtggtgg |
362 |
Q |
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||||||||| |||| ||||| |
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| T |
39741164 |
aatgttcctgttggaggtgg |
39741183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 34646049 - 34646118
Alignment:
| Q |
295 |
ttctgcaaaacatgcagaaggtactggactcaaggtggaacattgagaaatgttcctattggtggtggtt |
364 |
Q |
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| T |
34646049 |
ttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaaacattcctgttggtggtggtt |
34646118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 13481012 - 13481069
Alignment:
| Q |
219 |
gaagtgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagc |
276 |
Q |
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| T |
13481012 |
gaagtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagc |
13481069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 34976278 - 34976165
Alignment:
| Q |
223 |
tgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactgga |
322 |
Q |
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|||||||||||||||||| ||||||| |||||||| |||||||| || || || |||||||| | | ||||||||| || || |||||||| |||| |
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| T |
34976278 |
tgtccaaggtgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggtattgga |
34976179 |
T |
|
| Q |
323 |
ctcaaggtggaaca |
336 |
Q |
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| |||| |||||| |
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| T |
34976178 |
ccaaaggaggaaca |
34976165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 364
Target Start/End: Original strand, 41895787 - 41895928
Alignment:
| Q |
223 |
tgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactgga |
322 |
Q |
| |
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||||||||||| ||||| ||||| || ||||| || ||||| ||||||||||| || || || | | ||| |||||||| || |||||||| |||| |
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| T |
41895787 |
tgtccaaggtgcaattcaactaacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggtattgga |
41895886 |
T |
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| Q |
323 |
ctcaaggtggaacattgagaaatgttcctattggtggtggtt |
364 |
Q |
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| T |
41895887 |
ctgaaggtggttctttaagaaatgttcctgtaggtggtggtt |
41895928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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