View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_high_18 (Length: 254)
Name: NF5831_high_18
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_high_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 7474788 - 7474702
Alignment:
| Q |
168 |
ttgaaggaatgaattacctaattggtggtggcggaggtttgtttttgagcgtaattaggaggagagtagacgagagcagccaccata |
254 |
Q |
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| T |
7474788 |
ttgaaggaatgaattacctaattggtggtggcggaggtttgtttttgagcgtaattaggaggagagtagacgagagcagccaccata |
7474702 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 7474941 - 7474874
Alignment:
| Q |
15 |
aatactaaatggcctttagcaaagttttaatcagtaataatttcataacctaaattaattattcactc |
82 |
Q |
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| T |
7474941 |
aatactaaatggcctttagcaaagttttaatcagtaataatttcataacctaaattaattattcactc |
7474874 |
T |
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