View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_high_2 (Length: 557)
Name: NF5831_high_2
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 35950597 - 35950069
Alignment:
| Q |
12 |
catcatcatctccaaagaaacattnnnnnnnttgagaaagagtgtacccgatagaggagaagtaaagttgcggaaagctttcatagcagcttggttttga |
111 |
Q |
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| T |
35950597 |
catcatcatctccaaagaaacattaaaaaaattgagaaagagt--acccgatagaggagaagtaaagttgcggaaagctttcatagcagcttggttttga |
35950500 |
T |
|
| Q |
112 |
gcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccattgacatgaacagaggcattaaagcttggcttgtgttgtggaccgtcattcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35950499 |
gcttctttggcggaattgaaagcatcagaagaagcaaaggtgacaccattgacatgaacagaggcattaaagcttggcttgtgttgcggaccgtcattcg |
35950400 |
T |
|
| Q |
212 |
tggcagtgtatttcggcaaactccaccgtctctggtggcatagctgctgcaacttggtcttgaacattttcactttcactccttcctactatagctactg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35950399 |
tggcagtgtatttcggcaaactccaccgtctctggtggcatagctgctgcaacttggtcttgaacattttcactttcactccttcctactatagctactg |
35950300 |
T |
|
| Q |
312 |
catgaagaatatgagattaatttgaagaagatataacatggaccatttatgaaaatgaaaagtaaaaccaatgtcttgtcaactatacttacaagttaca |
411 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35950299 |
catgaagaatatgagattaatttgaaaaagatataacatggaccatttatgaaaatgaaaagtaaaaccaatgtcttgtcaactatacttacaagttaca |
35950200 |
T |
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| Q |
412 |
aaaactattgtatataatttgaataatgaagtatcacatattttgtcaccgttatatattgtagtagatatatggttaaaattacgtgatatagagttgc |
511 |
Q |
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| T |
35950199 |
aaaactcttgtatataatttgaataatgaagtatcacatattttgtcaccgttatatattgtagtagatatatggttaaaattacatgatatagagttgc |
35950100 |
T |
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| Q |
512 |
atgctttgtgtaagccatgtggtgtattttg |
542 |
Q |
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| T |
35950099 |
atgctttgtgtaagccatgtggtgtattttg |
35950069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 35955360 - 35955214
Alignment:
| Q |
61 |
gatagaggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccat |
160 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| |||||| | |||| |
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| T |
35955360 |
gataaaggagaagtgaagttgcggaaagctttcatagcagcttggttttgagcttctccggaggaattgaaggtatcagaagaagtaaaggtaaggccat |
35955261 |
T |
|
| Q |
161 |
tgacatgaacagaggcattaaagcttggcttgtgttgtggaccgtca |
207 |
Q |
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| T |
35955260 |
tcacaaaaacagagcccttaaagcttggattgtgtggtggaccgtca |
35955214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 35977976 - 35977839
Alignment:
| Q |
66 |
aggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccattgaca |
165 |
Q |
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|||| ||| ||||||| | ||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||| | |||||||||| |
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| T |
35977976 |
aggataagaaaagttgagcaaagctttcatagcagcttggttgtgagcttctttggaggaatgaaaaatatcagaagaagtaaaggttaaaccattgaca |
35977877 |
T |
|
| Q |
166 |
tgaacagaggcattaaagcttggcttgtgttgtggacc |
203 |
Q |
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|||||| | ||||| ||||| |||||| ||||||| |
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| T |
35977876 |
aagacagagcccttaaaacttggattgtgtggtggacc |
35977839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 35967786 - 35967652
Alignment:
| Q |
66 |
aggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccattgaca |
165 |
Q |
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|||||||| ||||||| | |||||||||| |||||||||||| ||||||||||||| ||||| ||||||||| |||| |||||| | |||||||||| |
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| T |
35967786 |
aggagaagaaaagttgagcaaagctttcagagcagcttggttgtgagcttctttggaggaatgaaaagcatca---gaagtaaaggttaaaccattgaca |
35967690 |
T |
|
| Q |
166 |
tgaacagaggcattaaagcttggcttgtgttgtggacc |
203 |
Q |
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|||||| | ||||||||||| |||||| ||||||| |
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| T |
35967689 |
aagacagagcccttaaagcttggtttgtgtggtggacc |
35967652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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