View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5831_high_9 (Length: 451)

Name: NF5831_high_9
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5831_high_9
NF5831_high_9
[»] chr4 (13 HSPs)
chr4 (19-451)||(7474255-7474692)
chr4 (92-210)||(24221775-24221893)
chr4 (92-210)||(26688354-26688472)
chr4 (92-210)||(16822086-16822203)
chr4 (92-210)||(41477475-41477594)
chr4 (101-210)||(39068563-39068672)
chr4 (86-210)||(30543669-30543792)
chr4 (92-207)||(23185413-23185528)
chr4 (111-210)||(9958376-9958475)
chr4 (126-210)||(33615448-33615532)
chr4 (92-210)||(35668139-35668257)
chr4 (53-130)||(15329269-15329346)
chr4 (90-204)||(42547052-42547167)
[»] scaffold0688 (2 HSPs)
scaffold0688 (92-210)||(2721-2839)
scaffold0688 (92-210)||(4388-4506)
[»] chr5 (6 HSPs)
chr5 (104-210)||(6011166-6011272)
chr5 (54-204)||(23928382-23928532)
chr5 (156-210)||(7945646-7945700)
chr5 (92-210)||(12854199-12854317)
chr5 (52-137)||(34696286-34696371)
chr5 (111-183)||(7945703-7945775)
[»] chr1 (20 HSPs)
chr1 (106-210)||(28250964-28251068)
chr1 (111-210)||(1246818-1246917)
chr1 (111-210)||(7145571-7145670)
chr1 (38-210)||(43312705-43312877)
chr1 (106-210)||(42666692-42666795)
chr1 (92-210)||(32829396-32829514)
chr1 (90-210)||(26262234-26262354)
chr1 (39-183)||(17190012-17190156)
chr1 (90-185)||(31964233-31964328)
chr1 (54-204)||(14795996-14796146)
chr1 (92-210)||(28881946-28882063)
chr1 (117-210)||(48788595-48788683)
chr1 (54-204)||(14804870-14805020)
chr1 (163-210)||(24250360-24250407)
chr1 (90-169)||(50050370-50050449)
chr1 (90-204)||(31199985-31200099)
chr1 (174-210)||(14939971-14940007)
chr1 (174-210)||(14949978-14950014)
chr1 (174-210)||(14954219-14954255)
chr1 (166-210)||(19264070-19264114)
[»] chr7 (9 HSPs)
chr7 (92-210)||(26624315-26624433)
chr7 (92-210)||(44524413-44524531)
chr7 (53-153)||(32538003-32538103)
chr7 (54-210)||(37633060-37633216)
chr7 (52-127)||(8804876-8804951)
chr7 (49-204)||(36107066-36107221)
chr7 (105-180)||(49105873-49105948)
chr7 (54-203)||(40210585-40210734)
chr7 (102-210)||(25981067-25981175)
[»] chr2 (14 HSPs)
chr2 (96-210)||(18765142-18765256)
chr2 (92-210)||(20565328-20565446)
chr2 (86-210)||(13369766-13369890)
chr2 (92-210)||(5702603-5702721)
chr2 (92-210)||(17206225-17206343)
chr2 (111-210)||(20464458-20464557)
chr2 (96-210)||(36441311-36441425)
chr2 (105-210)||(18890625-18890730)
chr2 (96-210)||(24140538-24140647)
chr2 (102-169)||(14793004-14793071)
chr2 (120-210)||(5533731-5533821)
chr2 (38-210)||(8423827-8423999)
chr2 (49-204)||(30357411-30357566)
chr2 (125-210)||(17473702-17473787)
[»] chr8 (17 HSPs)
chr8 (112-210)||(39330587-39330685)
chr8 (92-210)||(24617306-24617424)
chr8 (105-210)||(44172695-44172800)
chr8 (51-202)||(22342934-22343085)
chr8 (51-202)||(22354594-22354745)
chr8 (156-210)||(43799740-43799794)
chr8 (91-208)||(23443306-23443423)
chr8 (92-210)||(13248085-13248202)
chr8 (139-210)||(9994764-9994835)
chr8 (38-180)||(30233434-30233576)
chr8 (51-180)||(15004164-15004293)
chr8 (49-210)||(41492410-41492575)
chr8 (122-210)||(41293215-41293303)
chr8 (38-134)||(232631-232727)
chr8 (38-134)||(709042-709138)
chr8 (38-134)||(746254-746350)
chr8 (38-134)||(870149-870245)
[»] chr6 (6 HSPs)
chr6 (119-210)||(31261149-31261240)
chr6 (38-210)||(24261192-24261363)
chr6 (63-210)||(9605949-9606095)
chr6 (52-210)||(24496262-24496420)
chr6 (90-204)||(30125768-30125882)
chr6 (38-146)||(18999898-19000006)
[»] chr3 (9 HSPs)
chr3 (104-210)||(46552194-46552300)
chr3 (121-210)||(7840888-7840977)
chr3 (53-210)||(8262546-8262703)
chr3 (92-210)||(41237188-41237306)
chr3 (38-210)||(45222328-45222500)
chr3 (89-204)||(39084778-39084893)
chr3 (51-202)||(44269786-44269937)
chr3 (46-183)||(28699354-28699490)
chr3 (90-204)||(4773878-4773992)
[»] scaffold0001 (1 HSPs)
scaffold0001 (90-204)||(396890-397004)
[»] scaffold0004 (1 HSPs)
scaffold0004 (139-187)||(245879-245927)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 7474255 - 7474692
Alignment:
Q  19 aacttgggatcattagtatggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagata 118  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||  |||||||||||| || ||||||||||||||||||    
T  7474255 aacttgggatcattagtatggtgtacatgaatcggtttgggttcggtttgatcaaacctaaaactcgaattatataggatactccggtttgagtgagata 7474354  T
Q  119 aaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgg-----gttgggttggattgaataatgggttacccaacttattaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  7474355 aaataaccacccgttatataattggatgagtttggttaaacacactaatttttgggttgggttgggttggattgaataatgggttacccaacttattaag 7474454  T
Q  214 gaagatgaccctaatgattccttaagaatcaaagagggggtgcgaaaagtaaacagtttacattgtccaagttttaagtccaataaaacaaaatacaatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7474455 gaagatgaccctaatgattccttaagaatcaaagagggggtgcgaaaagtaaacagtttactttgtccaagttttaagtccaataaaacaaaatacaatt 7474554  T
Q  314 cttactcatcttcttcataattcgttattcaaccatcaaaacgcgatcgatctgagtgtgtgaagcttcagctatggcgttcttgaagggaaaggcagtc 413  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  7474555 cttactcatcttcttcattattcgttattcaaccatcaaaacgcgatcgatctgagtgtgagaagcttcagctatggcgttcttgaagggaaaggcagtt 7474654  T
Q  414 gttaccaaagtggcagcgttggcgagattcggtgtgct 451  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7474655 gttaccaaagtggcagcgttggcgagattcggtgtgct 7474692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 24221893 - 24221775
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||  ||||| |  ||||||  |||||| |||||||||||||||||||||||||  ||    
T  24221893 atagggtactccggtttgagtgaggtaaaataaccactcgttatactattgggtaggtttgggcaaacccactaatttttgggttgggttggattgggta 24221794  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||||||||||||    
T  24221793 atgggttacccaacttatt 24221775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 26688472 - 26688354
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||  ||||| || ||||||  ||| || |||||||||||||||||||||||||  ||    
T  26688472 ataggatactccggtttgagtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaatccactaatttttgggttgggttggattgggta 26688373  T
Q  192 atgggttacccaacttatt 210  Q
    || ||||||||||||||||    
T  26688372 ataggttacccaacttatt 26688354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 16822203 - 16822086
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||  ||||| || ||||||  |||||| ||||||||||||||||||||||||| ||     
T  16822203 atagggtactccggtttgggtgagg-aaaataaccacccgttatactattgggtgggtttggacaaacccactaatttttgggttgggttggattggatg 16822105  T
Q  192 atgggttacccaacttatt 210  Q
    |||| ||||||||||||||    
T  16822104 atggattacccaacttatt 16822086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 41477475 - 41477594
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttata-taattggatgagtttggttaaacccgctaatttttgggttgggttggattgaat 190  Q
    |||||||| |||| |||| || || |||||||||||||||||||| || ||||||| ||||||  ||| || ||||||||||||||| |||||||||  |    
T  41477475 atagggtactccgatttgggtaaggtaaaataaccacccgttatactatttggatgggtttgggcaaatccactaatttttgggttgtgttggattgggt 41477574  T
Q  191 aatgggttacccaacttatt 210  Q
    ||||||||||||||||||||    
T  41477575 aatgggttacccaacttatt 41477594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 39068672 - 39068563
Alignment:
Q  101 tccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttac 200  Q
    ||||||||| ||||| ||||||||||||||||||||  ||||  || ||||||  |||||| || | ||||||||||||||||||||  |||||||||||    
T  39068672 tccggtttgggtgaggtaaaataaccacccgttatactattgagtgtgtttgggcaaacccactgagttttgggttgggttggattgggtaatgggttac 39068573  T
Q  201 ccaacttatt 210  Q
    ||||||||||    
T  39068572 ccaacttatt 39068563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 30543669 - 30543792
Alignment:
Q  86 aattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggat 185  Q
    ||||| |||||||| |||||||||  |||| ||||||||||| ||||||||  ||||| || ||||||   |||||  ||||||||||||||||||||||    
T  30543669 aattaaatagggtactccggtttggatgaggtaaaataaccatccgttatactattgggtgggtttggacgaaccca-taatttttgggttgggttggat 30543767  T
Q  186 tgaataatgggttacccaacttatt 210  Q
    ||  |||||||||||||||||||||    
T  30543768 tgggtaatgggttacccaacttatt 30543792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 23185528 - 23185413
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    ||||| || ||||||||| ||||| ||||||||||||  ||||||  |||||  | ||||||  |||||| |||||||||||||||||||||||||  ||    
T  23185528 ataggatactccggtttgggtgaggtaaaataaccacatgttatactattgggcgggtttggacaaacccactaatttttgggttgggttggattgggta 23185429  T
Q  192 atgggttacccaactt 207  Q
    ||||||||||||||||    
T  23185428 atgggttacccaactt 23185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 9958376 - 9958475
Alignment:
Q  111 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||| |||||||||||||||||||   |||||||  ||||||  |||||| |||| ||||||||||||||||||||  ||||| |||||||||||||||    
T  9958376 gtgaggtaaaataaccacccgttattctattggataggtttggacaaacccactaagttttgggttgggttggattgggtaatgagttacccaacttatt 9958475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 33615448 - 33615532
Alignment:
Q  126 cacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||||||||||  ||||  || ||||||  |||||| ||||||||||||||||||||||||   |||||||||||||||||||||    
T  33615448 cacccgttatactattgtgtgggtttgggaaaaccctctaatttttgggttgggttggattaggtaatgggttacccaacttatt 33615532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 35668139 - 35668257
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| ||| ||||  ||||| |||||||| |||  ||||||  ||||| || ||||||  |||||| |||||||||||||||||||| ||||  ||    
T  35668139 atagggtactccagtttaggtgaggtaaaataatcactggttatactattgggtgggtttggacaaacccactaatttttgggttgggttgaattgcgta 35668238  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||  ||||||||    
T  35668239 atgggttacaaaacttatt 35668257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 15329269 - 15329346
Alignment:
Q  53 gtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccaccc 130  Q
    ||||||||| | |||||||||||  ||||||  ||  ||||||||| |||| ||||||||||| ||||||||||||||    
T  15329269 gtttgggttggatttgatcaaacccaaaacccaaaccatatagggttttccagtttgagtgaggtaaaataaccaccc 15329346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 42547052 - 42547167
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccaccc-gttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattga 188  Q
    |||||||||| ||||||||| || |||||||||| |||||| |||| || | ||| || ||||||  |||||| ||||||| ||| |||| |||| |||     
T  42547052 atatagggtactccggtttgggttagataaaatatccaccccgttaaattaatgggtgggtttgggcaaacccactaatttctggtttggtttgggttgg 42547151  T
Q  189 ataatgggttacccaa 204  Q
     || ||||||||||||    
T  42547152 gtagtgggttacccaa 42547167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 2839 - 2721
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| | | ||||| ||||| ||||||||||||||||||||| ||||| || ||||||  |||||| |||||||||||||||||||||||||  ||    
T  2839 atagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggacaaacccactaatttttgggttgggttggattgggta 2740  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||||||||||||    
T  2739 atgggttacccaacttatt 2721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 4506 - 4388
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| | | ||||| ||||| ||||||||||||||||||||| ||||| || ||||||  |||||| |||||||||||||||||||||||||  ||    
T  4506 atagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggccaaacccactaatttttgggttgggttggattgggta 4407  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||| ||||||||||    
T  4406 atgggttatccaacttatt 4388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 6011272 - 6011166
Alignment:
Q  104 ggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttaccca 203  Q
    |||||| ||||| ||||||||||||||||||||| ||||| || ||||||  |||||  |||||||||||||||||||||||||  ||||||||||||||    
T  6011272 ggtttgggtgaggtaaaataaccacccgttatattattgggtgggtttgggcaaacctactaatttttgggttgggttggattgggtaatgggttaccca 6011173  T
Q  204 acttatt 210  Q
    |||||||    
T  6011172 acttatt 6011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 23928532 - 23928382
Alignment:
Q  54 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 153  Q
    |||||||| |||||| ||||||  || ||| |||  |||||||||||||||||||| || || ||||||| |||||||||| || | ||| || ||||||    
T  23928532 tttgggttgggtttggtcaaacccaagacccgaaccatatagggtattccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgg 23928433  T
Q  154 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
      |||||| |||||||| || |||| |||| |||  || ||||||||||||    
T  23928432 gcaaacccactaattttcggtttggtttgggttgggtagtgggttacccaa 23928382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 7945700 - 7945646
Alignment:
Q  156 aaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||||| ||| |||||||||||||||||||||  || ||||||||||||||||||    
T  7945700 aaacccactagtttttgggttgggttggattgggtagtgggttacccaacttatt 7945646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 12854199 - 12854317
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    ||||| || ||||||||  ||||| ||||||||||||||||||||  ||| | ||  |||||  |||||||||||||| |||||||  || |||||  ||    
T  12854199 ataggatactccggtttaggtgaggtaaaataaccacccgttatactatttggtggatttgggcaaacccgctaatttatgggttgaattagattggcta 12854298  T
Q  192 atgggttacccaacttatt 210  Q
    ||| ||||||| |||||||    
T  12854299 atgcgttaccctacttatt 12854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 34696286 - 34696371
Alignment:
Q  52 ggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    |||||||| | ||||||  ||||| ||| |||||||  ||||| | |||||||||||| ||||| ||||||  |||||||||||||    
T  34696286 ggtttgggctgggtttggccaaacctaagacctgaaccatataagatattccggtttgggtgaggtaaaatgtccacccgttatat 34696371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 7945775 - 7945703
Alignment:
Q  111 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttgg 183  Q
    ||||| |||||||| |||| | ||||  ||||| || ||||||  |||||| |||||||||||||||||||||    
T  7945775 gtgaggtaaaataatcacctgatataccattgggtgggtttgggcaaacccactaatttttgggttgggttgg 7945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 28250964 - 28251068
Alignment:
Q  106 tttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaac 205  Q
    |||| ||||| ||||||||||||||||||||  ||||| || ||||||  |||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  28250964 tttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaaccctctaatttttgggttgggttggattggataatgggttgcccaac 28251063  T
Q  206 ttatt 210  Q
    |||||    
T  28251064 ttatt 28251068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 1246917 - 1246818
Alignment:
Q  111 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||||||||||||||||  ||||| ||  |||||  |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  1246917 gtgagataaaataaccacccgttatactattgggtggatttgggcaaacccactaatttttgggttgggttggattgggtaatgggttacccaacttatt 1246818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 7145571 - 7145670
Alignment:
Q  111 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||||||||||||||||  ||||| ||  |||||  |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  7145571 gtgagataaaataaccacccgttatactattgggtggatttgggcaaacccactaatttttgggttgggttggattgggtaatgggttacccaacttatt 7145670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 43312705 - 43312877
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    ||||||| |||||||||||||||| |||||| ||||||  ||||||| ||  |||||  ||||| || |||||||||| |||||||||||| ||| ||||    
T  43312705 ggtgtacgtgagtcggtttgggttgggtttggtcaaacccaaaacctaaaccatataaagtatttcgatttgagtgaggtaaaataaccactcgtcatat 43312804  T
Q  138 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
     |||| |   |||| | ||||||  ||||||||| |||||||||||||||  || |||||||||||| |||||    
T  43312805 cattgtaccggtttaggtaaacctactaattttttggttgggttggattgggtagtgggttacccaaattatt 43312877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 42666692 - 42666795
Alignment:
Q  106 tttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaac 205  Q
    |||| ||||| ||||||||||||| ||||||  |||||||| ||||||  |||||| |||||||||||||||||||||||||  |||||||||||| |||    
T  42666692 tttgggtgaggtaaaataaccacc-gttataatattggatgggtttggacaaacccactaatttttgggttgggttggattgggtaatgggttacctaac 42666790  T
Q  206 ttatt 210  Q
    |||||    
T  42666791 ttatt 42666795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 32829396 - 32829514
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    ||||| || ||||||||| ||||| |||||||||||| |||||||  ||||| || ||||||  ||| || ||||||||||||||||||| |||||  ||    
T  32829396 ataggctactccggtttgggtgaggtaaaataaccactcgttatactattgggtgggtttggacaaatccactaatttttgggttgggttagattgggta 32829495  T
Q  192 atgggttacccaacttatt 210  Q
    ||||||||||| |||||||    
T  32829496 atgggttacccgacttatt 32829514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 26262234 - 26262354
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 189  Q
    ||||| |||| || |||||| ||||| |||||||| |||  ||||||| |||||||| ||||||  ||||||| |||||||||||||||||| ||||| |    
T  26262234 atataaggtactctggtttgggtgaggtaaaataatcacatgttatatcattggatgggtttgggcaaacccgttaatttttgggttgggtttgattgga 26262333  T
Q  190 taatgggttacccaacttatt 210  Q
    |||| | ||| ||||||||||    
T  26262334 taatagattatccaacttatt 26262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 17190156 - 17190012
Alignment:
Q  39 gtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatata 138  Q
    |||||| || ||||||||||||| ||||||| ||||| ||||||| |||| ||||| |||| || | |||| | ||| | ||||||||||||||||||      
T  17190156 gtgtacgtgggtcggtttgggttgggtttgaccaaacctaaaacccgaatcatataaggtactcggatttgggagaggtgaaataaccacccgttatacc 17190057  T
Q  139 attggatgagtttggttaaacccgctaatttttgggttgggttgg 183  Q
    ||||| ||  || ||  ||||||| |||||| ||||||| |||||    
T  17190056 attgggtggattcggacaaacccgttaatttatgggttgagttgg 17190012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 31964328 - 31964233
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggat 185  Q
    |||||||||| ||||||||||||||| |||||||| |||| ||||||  |||||||  | ||||  ||||| |||||||| |||||||| ||||||    
T  31964328 atatagggtactccggtttgagtgaggtaaaataatcacctgttataccattggatcggattgggcaaacctgctaatttatgggttggattggat 31964233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 14796146 - 14795996
Alignment:
Q  54 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 153  Q
    |||||||| |||||| ||||||  || ||| ||| ||||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||    
T  14796146 tttgggttgggtttggtcaaacccaagacccgaactatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgg 14796047  T
Q  154 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
      |||||| |||||||  || |||| |||| |||  || ||||||||||||    
T  14796046 gcaaacccactaatttccggtttggtttgggttgggtagtgggttacccaa 14795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 28881946 - 28882063
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    ||||| || ||||||||| ||||| |||||||| ||||||| |||  ||||| || ||||||  |||||| |||||  |||||||| |||||||||  ||    
T  28881946 ataggatactccggtttgggtgaggtaaaataatcacccgt-atactattgggtgggtttgggcaaacccactaatacttgggttgagttggattgggta 28882044  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||||||| ||||    
T  28882045 atgggttacccaacatatt 28882063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 48788595 - 48788683
Alignment:
Q  117 taaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||||||||||||| |||||  | |||||| ||||||  ||||||||||||||     ||||||||||||| ||||||| ||||||||||||||    
T  48788595 taaaataaccacccattataccactggatgggtttgggcaaacccgctaattt-----ttgggttggattggataatggattacccaacttatt 48788683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 14805020 - 14804870
Alignment:
Q  54 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 153  Q
    |||||||| |||||| ||||||  ||  || ||| ||||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||    
T  14805020 tttgggttgggtttggtcaaacccaagtcccgaactatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgg 14804921  T
Q  154 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
      |||||| |||||||  || |||| |||| |||  || ||||||||||||    
T  14804920 gcaaacccactaatttccggtttggtttgggttgggtagtgggttacccaa 14804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 24250407 - 24250360
Alignment:
Q  163 ctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||| |||||||||||||||||| |||||| ||| ||||||||||    
T  24250407 ctaatttctgggttgggttggattgagtaatggattatccaacttatt 24250360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 50050449 - 50050370
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaattt 169  Q
    ||||||| |||||||||||| || || ||||||| |||||||||| || | ||| |||||||||  |||||| |||||||    
T  50050449 atataggatattccggtttgggttaggtaaaatatccacccgttaaattaatgggtgagtttggacaaacccactaattt 50050370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 31199985 - 31200099
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 189  Q
    ||||| |||||||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| |||||||  || |||| |||| |||      
T  31199985 atataaggtattccggtttgggttaggtaaaatatccacccgttagattaatgggtgggtttggacaaacccactaatttccggtttggtttgggttggg 31200084  T
Q  190 taatgggttacccaa 204  Q
    || ||||||||||||    
T  31200085 tagtgggttacccaa 31200099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 14940007 - 14939971
Alignment:
Q  174 gttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  14940007 gttgggttggattgagtaatgggttgcccaacttatt 14939971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 14950014 - 14949978
Alignment:
Q  174 gttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  14950014 gttgggttggattgagtaatgggttgcccaacttatt 14949978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 14954255 - 14954219
Alignment:
Q  174 gttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  14954255 gttgggttggattgagtaatgggttgcccaacttatt 14954219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 19264114 - 19264070
Alignment:
Q  166 atttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||||| |||||| ||||||||  |||||||||||||||||||||    
T  19264114 attttttggttggattggattgggtaatgggttacccaacttatt 19264070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 26624315 - 26624433
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| | |||||||  |||| |||||||| |||  ||||||  ||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  26624315 atagggtacttcggtttggatgaggtaaaataatcacgggttatactattgggtgagtttgggtaaacccactaatttttgggttgggttggattgatta 26624414  T
Q  192 atgggttacccaacttatt 210  Q
    ||||||||||| |||||||    
T  26624415 atgggttacccgacttatt 26624433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 44524531 - 44524413
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||||||  ||||| ||||| |||||||| || | ||||||  ||||  |||||||||  ||| || |||||||||||||||||||||||||  ||    
T  44524531 atagggtattctagtttgggtgaggtaaaataatcatctgttatactattgagtgagtttggacaaatccactaatttttgggttgggttggattgggta 44524432  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||| ||||||||||    
T  44524431 atgggttatccaacttatt 44524413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 32538003 - 32538103
Alignment:
Q  53 gtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttg 152  Q
    |||| |||| |||||||||||||  || |||||||  |||||||||| ||||||||||||||| ||||||  |||||| |||||| | ||| ||||||||    
T  32538003 gtttaggttgggtttgatcaaacccaagacctgaaccatatagggtactccggtttgagtgaggtaaaatgtccacccattatattaatgggtgagtttg 32538102  T
Q  153 g 153  Q
    |    
T  32538103 g 32538103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 37633216 - 37633060
Alignment:
Q  54 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 153  Q
    |||||||| ||||||| |||||  || ||| |||| |||||||||||||||||||| ||||| || |||  |||||  |||||| | ||| |||||||||    
T  37633216 tttgggttgggtttgaccaaacccaatacccgaatcatatagggtattccggtttgggtgaggtagaatgtccacctattatattaatgggtgagtttgg 37633117  T
Q  154 ttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
      |||||| ||| |||| || |||| || | |||  || |||||||||||| |||||    
T  37633116 acaaacccactagttttcggtttggttttggttgggtagtgggttacccaaattatt 37633060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 8804876 - 8804951
Alignment:
Q  52 ggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataacca 127  Q
    ||||| |||| ||||||| |||||| || |||| ||| ||||||||||||   |||||||||||||||||||||||    
T  8804876 ggtttaggttgggtttgaccaaactcaatacctaaatcatatagggtatttttgtttgagtgagataaaataacca 8804951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 36107066 - 36107221
Alignment:
Q  49 gtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgag 148  Q
    |||| |||||||| ||||||  |||||  || ||| |||  |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || |    
T  36107066 gtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtggg 36107165  T
Q  149 tttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
    |||||  |||||| |||||||  || |||| |||| ||| ||| ||||||||||||    
T  36107166 tttgggcaaacccactaatttccggtttggtttgggttggatagtgggttacccaa 36107221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 49105948 - 49105873
Alignment:
Q  105 gtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggt 180  Q
    ||||| ||||| ||||||||||||| ||||||  ||||| || ||||||  ||||||  |||||||||||||||||    
T  49105948 gtttgggtgaggtaaaataaccaccagttatactattgggtgggtttgggcaaacccattaatttttgggttgggt 49105873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 40210734 - 40210585
Alignment:
Q  54 tttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttgg 153  Q
    |||||||| | |||| ||||||  || ||| |||| |||||||||| ||||||||| ||  | |||||||  ||||||||| || | ||| || ||||||    
T  40210734 tttgggttggatttggtcaaacccaagacccgaatcatatagggtactccggtttgggtttggtaaaatattcacccgttaaattaatgggtgggtttgg 40210635  T
Q  154 ttaaacccgctaatttttgggttgggttggattgaataatgggttaccca 203  Q
      |||||| |||||||| || |||| |||| |||  || |||||||||||    
T  40210634 gcaaacccactaattttcggtttggtttgggttgggtagtgggttaccca 40210585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 25981067 - 25981175
Alignment:
Q  102 ccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacc 201  Q
    |||||||| ||||  ||||||||||||| ||||||| ||||| |  |||||   |||||| ||||||| ||| ||| |||||||||  |  |||||||||    
T  25981067 ccggtttgggtgaagtaaaataaccacctgttatattattgggtcggtttgagcaaacccactaatttctggtttgagttggattgggtggtgggttacc 25981166  T
Q  202 caacttatt 210  Q
    ||| |||||    
T  25981167 caaattatt 25981175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 18765142 - 18765256
Alignment:
Q  96 ggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgg 195  Q
    |||| ||||||||| ||||| ||||||||||||||||||||  ||||| || ||||||  |||||| ||||||||||||||| ||| |||||| ||||||    
T  18765142 ggtactccggtttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttttgggttgagttagattgagtaatgg 18765241  T
Q  196 gttacccaacttatt 210  Q
    ||||||| |||||||    
T  18765242 gttacccgacttatt 18765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 20565446 - 20565328
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| ||| ||||| ||| | ||||||||||||||||||||  ||||| || ||||||  |||||| |||||||||||||| ||||||||||  ||    
T  20565446 atagggtactccagtttgggtggggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttttgggttaggttggattgggta 20565347  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||||||||||||    
T  20565346 atgggttacccaacttatt 20565328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 13369890 - 13369766
Alignment:
Q  86 aattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggat 185  Q
    ||||| |||||||| | ||||||| ||||  |||||||||||  |||||||  ||||| || |||||| ||||||| |||||||||||||||||||||||    
T  13369890 aattaaatagggtacttcggtttgggtgaagtaaaataaccatacgttatactattgggtgggtttggataaacccactaatttttgggttgggttggat 13369791  T
Q  186 tgaataatgggttacccaacttatt 210  Q
    ||  ||||||||| |||||||||||    
T  13369790 tgggtaatgggttgcccaacttatt 13369766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 5702603 - 5702721
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| | ||||||||||||| |||||||| || | ||||||  |||||||| |||| |  |||| | ||||||||||||||| |||||||||  ||    
T  5702603 atagggtacttcggtttgagtgaggtaaaataatcatctgttatactattggatgggtttaggcaaactcactaatttttgggttgagttggattgggta 5702702  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||||||||||||    
T  5702703 atgggttacccaacttatt 5702721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 17206343 - 17206225
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||| ||| ||| ||||| ||||| |||||||| || ||||||||  ||||  |||||||||  |||| | |||||||||||||||||||||||||  ||    
T  17206343 atagagtactccagtttgggtgaggtaaaataatcatccgttatactattgagtgagtttgggcaaactcactaatttttgggttgggttggattgggta 17206244  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||||||||||||||    
T  17206243 atgggttacccaacttatt 17206225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 20464557 - 20464458
Alignment:
Q  111 gtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||| ||||||||||||||||||||  ||||| ||  |||||  ||| || ||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  20464557 gtgaggtaaaataaccacccgttatactattgggtggatttgggaaaatccactaattttttggttgggttggattgagtaatgagttacccaacttatt 20464458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 36441311 - 36441425
Alignment:
Q  96 ggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgg 195  Q
    |||| ||||||||| ||||| ||||||||||||||||||||  ||||| || |||| |  |||| |  |||||||| |||||||||||||||  ||||||    
T  36441311 ggtactccggtttgggtgaggtaaaataaccacccgttatactattgggtgggtttaggcaaactcattaatttttaggttgggttggattgggtaatgg 36441410  T
Q  196 gttacccaacttatt 210  Q
     ||||||||||||||    
T  36441411 attacccaacttatt 36441425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 18890625 - 18890730
Alignment:
Q  105 gtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
    ||||| ||||| ||||||||||||||||||||  ||| | ||  |||||  ||||||  |||||||| |||||||||||||||| ||||||||||| |||    
T  18890625 gtttgggtgaggtaaaataaccacccgttatactatttggtggatttggacaaacccattaatttttcggttgggttggattgagtaatgggttactcaa 18890724  T
Q  205 cttatt 210  Q
    ||||||    
T  18890725 cttatt 18890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 24140647 - 24140538
Alignment:
Q  96 ggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgg 195  Q
    |||||| ||||||| ||||  ||||||||||| | ||||||  |||||||| ||||||| |||||| ||||||||||||     |||||||| ||||| |    
T  24140647 ggtatttcggtttgggtgaagtaaaataaccatctgttatactattggatgggtttggtcaaacccactaatttttggg-----ttggattggataattg 24140553  T
Q  196 gttacccaacttatt 210  Q
    |||||||||||||||    
T  24140552 gttacccaacttatt 24140538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 14793004 - 14793071
Alignment:
Q  102 ccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaattt 169  Q
    |||||||||| ||| |||||||||||| |||||||| ||||| || |||||| |||||||||||||||    
T  14793004 ccggtttgagcgaggtaaaataaccacacgttatatcattgggtgggtttggataaacccgctaattt 14793071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 5533821 - 5533731
Alignment:
Q  120 aataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||||||| ||||||||| ||||| |  |||||| |||| |||||||||| |||||||| || |||||  |||||| ||||||||||||||    
T  5533821 aataaccatccgttatatcattgggtcggtttggataaatccgctaatttctgggttggtttagattgggtaatggattacccaacttatt 5533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 8423999 - 8423827
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    ||||||| || || |||||||||| ||||||| |||||  |||||| |||  |||||| ||| ||||||||| ||||| ||||||  ||| |||||||||    
T  8423999 ggtgtacgtgggtgggtttgggttgggtttgaccaaacccaaaacccgaaccatatagagtactccggtttgggtgaggtaaaatgtccatccgttatat 8423900  T
Q  138 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
     | ||| || || |||  |||||| ||| |||| || |||| |||| ||| ||  |||||||||||| |||||    
T  8423899 tactgggtgggtctggacaaacccactagttttcggtttggtttgggttggatggtgggttacccaagttatt 8423827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 30357566 - 30357411
Alignment:
Q  49 gtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgag 148  Q
    |||| |||||||| ||||||  |||||  || ||| |||  |||||||||| ||||||||| || || ||||||| |||||||||| || | |||||| |    
T  30357566 gtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatggatggg 30357467  T
Q  149 tttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
    |||||  |||||| |||||||  || |||| |||| ||| ||  ||||||||||||    
T  30357466 tttgggcaaacccactaatttccggtttggtttgggttggatggtgggttacccaa 30357411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 17473702 - 17473787
Alignment:
Q  125 ccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||| | ||| ||||||||| ||||| | |||||||| || |||| ||||||||  || |||||||||||| |||||    
T  17473702 ccacccgttatattaatgggtgagtttgggtaaactcactaattttcggtttggtttggattgggtagtgggttacccaaattatt 17473787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 39330587 - 39330685
Alignment:
Q  112 tgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||| ||||||||||||| ||||||  |||||||| ||||||  |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  39330587 tgaggtaaaataaccacctgttatactattggatgggtttggacaaacccactaatttttgtgttggattggattggataatgggttacccaacttatt 39330685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 24617424 - 24617306
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| | ||||||| |||||||||||||||||   ||||||  ||||  || ||||||  |||||| |||||||||||||||||||||||||  ||    
T  24617424 atagggtacttcggtttgggtgagataaaataaccatttgttatactattgagtgggtttgggcaaacccactaatttttgggttgggttggattgggta 24617325  T
Q  192 atgggttacccaacttatt 210  Q
    ||||| |||||||||||||    
T  24617324 atgggctacccaacttatt 24617306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 44172800 - 44172695
Alignment:
Q  105 gtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaa 204  Q
    ||||| ||||| ||||||||||||  ||||||  ||||| || ||||||   | ||| |||||||||||||||||||||||||  |||||||||||||||    
T  44172800 gtttgggtgaggtaaaataaccacttgttatactattgggtgggtttgggcgagcccactaatttttgggttgggttggattgggtaatgggttacccaa 44172701  T
Q  205 cttatt 210  Q
    ||||||    
T  44172700 cttatt 44172695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 22343085 - 22342934
Alignment:
Q  51 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 150  Q
    ||||||||||| ||||||  |||||  ||||||  ||  |||||||||| ||||||||| ||||| ||||||| |||||||||| |  |||||   ||||    
T  22343085 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggccagtt 22342986  T
Q  151 tggttaaacccgctaatttttgggttgggttggattgaataatgggttaccc 202  Q
    ||| ||| ||| ||||||| ||||||||||||| |||  || ||||||||||    
T  22342985 tgggtaagcccactaatttctgggttgggttgggttgggtagtgggttaccc 22342934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 22354745 - 22354594
Alignment:
Q  51 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 150  Q
    ||||||||||| ||||||  |||||  ||||||  ||  |||||||||| ||||||||| ||||| ||||||| |||||||||| |  |||||   ||||    
T  22354745 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggccagtt 22354646  T
Q  151 tggttaaacccgctaatttttgggttgggttggattgaataatgggttaccc 202  Q
    ||| ||| ||| ||||||| ||||||||||||| |||  || ||||||||||    
T  22354645 tgggtaagcccactaatttctgggttgggttgggttgggtagtgggttaccc 22354594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 43799740 - 43799794
Alignment:
Q  156 aaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  43799740 aaacccactaatttttgggttgggttggattgggtaatgggttacccaacttatt 43799794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 23443423 - 23443306
Alignment:
Q  91 tatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaat 190  Q
    |||| |||| ||| ||||||| ||||||||||||||||  ||||||  |||| ||| ||||||  || ||| ||||||| |||||||||||||||||  |    
T  23443423 tatatggtactccagtttgagcgagataaaataaccacatgttataccattgaatgggtttgggcaagcccactaatttatgggttgggttggattgggt 23443324  T
Q  191 aatgggttacccaactta 208  Q
    ||||| ||| ||||||||    
T  23443323 aatggattatccaactta 23443306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 13248085 - 13248202
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    ||||| || ||||||| ||||||  ||||||||||  ||||||||  ||||| || ||||||  |||||| || ||||||||||| |||||||||| |||    
T  13248085 ataggatactccggttcgagtgaagtaaaataaccctccgttatactattgggtgggtttggacaaacccacttatttttgggtt-ggttggattggata 13248183  T
Q  192 atgggttacccaacttatt 210  Q
    |||| ||| ||||||||||    
T  13248184 atggattatccaacttatt 13248202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 9994764 - 9994835
Alignment:
Q  139 attggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||| |||||||||  ||| || ||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  9994764 attgggtgagtttgggcaaatccactaatttttagattgggttggattgagtaatggattacccaacttatt 9994835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 30233576 - 30233434
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    ||||||| || ||||||||||||| ||||||| |||||  || ||| |||  ||| |||||| |||||||   ||||| |||||||| || ||||||||     
T  30233576 ggtgtacgtgggtcggtttgggttgggtttgaccaaacccaagacccgaaccatagagggtactccggttaaggtgaggtaaaataatcatccgttatac 30233477  T
Q  138 aattggatgagtttggttaaacccgctaatttttgggttgggt 180  Q
     ||||||   |||||| ||||||| |||||||| || ||||||    
T  30233476 tattggaccggtttgggtaaacccactaattttcggtttgggt 30233434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 15004164 - 15004293
Alignment:
Q  51 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 150  Q
    ||||||||||| ||||||  |||||  ||||||  ||  |||||||||| ||||||||| ||||| ||||||| |||||||||| |  |||||    |||    
T  15004164 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggctggtt 15004263  T
Q  151 tggttaaacccgctaatttttgggttgggt 180  Q
    ||| ||||||| |||||||  |||||||||    
T  15004264 tgggtaaacccactaatttccgggttgggt 15004293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 41492410 - 41492575
Alignment:
Q  49 gtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatata----attgga 144  Q
    ||||||||||||| || |||  |||||  |||||| ||| ||||||| ||| ||||||||  ||||| |||||||||||||  |||||||    |||||     
T  41492410 gtcggtttgggttggggttggccaaacccaaaacccgaactatatagtgtactccggtttaggtgaggtaaaataaccaccaattatatatactattggg 41492509  T
Q  145 tgagtttggttaaacccgctaatttttgggttgggttggattgaataa-tgggttacccaacttatt 210  Q
    || |||||| |||||||| ||| || ||||||| ||||||||   |||  |||||||||||||||||    
T  41492510 tgggtttggataaacccgttaa-ttctgggttgcgttggatttggtaacggggttacccaacttatt 41492575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 41293215 - 41293303
Alignment:
Q  122 taaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||| |||||| |||||||| |||||   |||  ||||||||||||||||| ||  |||||  |||||| ||||||||||||||    
T  41293215 taaccacccattatattattggatgggtttgaccaaattcgctaatttttgggttgagtatgattgggtaatggattacccaacttatt 41293303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 232727 - 232631
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgtta 134  Q
    ||||||| || |||| |||||||| |||||| |||||   || ||| ||||||||||| ||| ||||||||| || || | ||||| ||||||||||    
T  232727 ggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtta 232631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 709138 - 709042
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgtta 134  Q
    ||||||| || |||| |||||||| |||||| |||||   || ||| ||||||||||| ||| ||||||||| || || | ||||| ||||||||||    
T  709138 ggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtta 709042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 746350 - 746254
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgtta 134  Q
    ||||||| || |||| |||||||| |||||| |||||   || ||| ||||||||||| ||| ||||||||| || || | ||||| ||||||||||    
T  746350 ggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtta 746254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 870245 - 870149
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgtta 134  Q
    ||||||| || |||| |||||||| |||||| |||||   || ||| ||||||||||| ||| ||||||||| || || | ||||| ||||||||||    
T  870245 ggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtta 870149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 31261149 - 31261240
Alignment:
Q  119 aaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||||||||||||||  ||||| |  ||||||  |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  31261149 aaataaccacccgttatactattgggtaggtttgggcaaacccacaaatttttgggttgggttggattggataatgggttacccaacttatt 31261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 24261192 - 24261363
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    ||||||| || ||||||||||||| |||||| | ||||  ||||||  ||  | ||||  || ||||||||| ||||| ||||| ||||||| |||||||    
T  24261192 ggtgtacatgggtcggtttgggttgggtttggtaaaacccaaaacccaaaccacatagaatactccggtttgggtgaggtaaaacaaccaccagttatat 24261291  T
Q  138 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
     ||||| || ||||||  |||||||||||||| |||| ||||||||||||  | ||| |||||||| ||||||    
T  24261292 cattgg-tgggtttgggcaaacccgctaatttatgggctgggttggattgggttatgagttacccagcttatt 24261363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 9605949 - 9606095
Alignment:
Q  63 ggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccg 162  Q
    |||||| ||||||| ||||||  || || |||||||| || |||||| ||||| ||||||||||| | ||||||  ||||| || ||||||  ||| |      
T  9605949 ggtttggtcaaactcaaaacca-aactaaatagggtactcaggtttgggtgaggtaaaataaccatctgttatactattgggtgggtttgggcaaatcga 9606047  T
Q  163 ctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    || ||||||||||||||||||||||  |||||||||| ||||||||||    
T  9606048 ctgatttttgggttgggttggattgggtaatgggttatccaacttatt 9606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 24496420 - 24496262
Alignment:
Q  52 ggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagttt 151  Q
    |||||||||| ||||||| |||||  ||||||  ||||| |||||||| | | ||||| ||| | ||||||||||| ||||||||  |||||||| ||||    
T  24496420 ggtttgggttgggtttgaccaaacccaaaacca-aattaaatagggtacttcagtttgggtggggtaaaataaccatccgttatactattggatgggttt 24496322  T
Q  152 ggttaaacccgctaatttttggg-ttgggttggattgaataatgggttacccaacttatt 210  Q
    ||  ||||||  ||||||||||| |||||||| ||||  ||||| |||||  ||||||||    
T  24496321 ggacaaacccattaatttttgggtttgggttgaattgggtaatgagttacttaacttatt 24496262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 30125882 - 30125768
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 189  Q
    |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| ||||||| ||| |||| |||| |||      
T  30125882 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttctggtttggtttgggttggg 30125783  T
Q  190 taatgggttacccaa 204  Q
    || ||||||||||||    
T  30125782 tagtgggttacccaa 30125768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 19000006 - 18999898
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    ||||||| || || |||||||||| ||||||  |||||  || | | ||| ||||||| ||| || |||||| ||||| ||||||  |||||||||||||    
T  19000006 ggtgtacgtgggtgggtttgggttgggtttggccaaacccaagatccgaactatatagagtactctggtttgggtgaggtaaaatgtccacccgttatat 18999907  T
Q  138 aattggatg 146  Q
     ||||||||    
T  18999906 tattggatg 18999898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 46552300 - 46552194
Alignment:
Q  104 ggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttaccca 203  Q
    |||||| || || ||||||||||| || |||||  ||||| || ||||||  |||||  |||||||||||||||||||||||||  ||||||| ||||||    
T  46552300 ggtttgggtaaggtaaaataaccatccattataccattgggtgggtttggacaaaccaactaatttttgggttgggttggattgggtaatgggataccca 46552201  T
Q  204 acttatt 210  Q
    |||||||    
T  46552200 acttatt 46552194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 7840977 - 7840888
Alignment:
Q  121 ataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    ||||||| |||||||   ||||| || ||||||  |||||| |||| ||||||||||||||||||||  |||||||||||||||||||||    
T  7840977 ataaccatccgttattctattgggtgggtttggacaaacccactaagttttgggttgggttggattgggtaatgggttacccaacttatt 7840888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 8262546 - 8262703
Alignment:
Q  53 gtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttg 152  Q
    ||||||||| ||||||  |||||  | ||||| ||  |||||||||  ||| ||||| ||||| |||||||| || || |||||  ||||  |  |||||    
T  8262546 gtttgggttgggtttggccaaacccagaacctaaaccatatagggtgctccagtttgggtgaggtaaaataaacatccattataccattgtgttggtttg 8262645  T
Q  153 gttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
    |  ||||||| |||||| |||||||||||||||||  |||||||||||||||||||||    
T  8262646 ggcaaacccgttaatttctgggttgggttggattgggtaatgggttacccaacttatt 8262703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 41237306 - 41237188
Alignment:
Q  92 atagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaata 191  Q
    |||||||| | || |||| ||||| ||||||||||||  || |||  ||||| || ||||||  || ||| |||||||||||||||||||||||||  ||    
T  41237306 atagggtacttcgatttgggtgaggtaaaataaccacttgtcatactattgggtgggtttgggcaatcccactaatttttgggttgggttggattgggta 41237207  T
Q  192 atgggttacccaacttatt 210  Q
    |||||||| |||| |||||    
T  41237206 atgggttatccaagttatt 41237188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 45222328 - 45222500
Alignment:
Q  38 ggtgtacttgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatat 137  Q
    ||||||| || || |||||||||| ||||||| |||||  || ||| |||  ||||||||||  |||||||| ||||| ||||||  |||||| ||||||    
T  45222328 ggtgtacgtgggtgggtttgggttgggtttgaccaaacccaagacccgaaccatatagggtaccccggtttgggtgaggtaaaatgtccacccattatat 45222427  T
Q  138 aattggatgagtttggttaaacccgctaatttttgggttgggttggattgaataatgggttacccaacttatt 210  Q
     | |||||| ||||||  |||||| ||| |||| || |||| |||| |||   | |||||||||||| |||||    
T  45222428 taatggatgggtttgggaaaacccactagttttcggtttggtttgggttgggcagtgggttacccaaattatt 45222500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 39084778 - 39084893
Alignment:
Q  89 tatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattga 188  Q
    ||||||||||| ||||||||| || || ||||||| |||||||||| || | |||||| ||||||  |||||| |||||||  || |||| |||| |||     
T  39084778 tatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatggatgggtttgggcaaacccactaatttccggtttggtttgggttgg 39084877  T
Q  189 ataatgggttacccaa 204  Q
     || ||||||||||||    
T  39084878 gtagtgggttacccaa 39084893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 44269786 - 44269937
Alignment:
Q  51 cggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtt 150  Q
    ||||||||||| ||||||  |||||  ||||||  ||  ||||| |||| ||||||||| ||||||||||||  |||||||||| |  ||||||   |||    
T  44269786 cggtttgggttgggtttggccaaacccaaaacccaaaccatataaggtactccggtttgggtgagataaaatgtccacccgttaaactattggaccggtt 44269885  T
Q  151 tggttaaacccgctaatttttgggttgggttggattgaataatgggttaccc 202  Q
    ||| ||||||| |||||||  ||||||| |||| |||  || ||||||||||    
T  44269886 tgggtaaacccactaatttccgggttggattgggttgggtagtgggttaccc 44269937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 28699354 - 28699490
Alignment:
Q  46 tgagtcggtttgggttcggtttgatcaaacttaaaacctgaattatatagggtattccggtttgagtgagataaaataaccacccgttatataattggat 145  Q
    ||||||||||| | || ||||||| ||| ||||| | | |||| |||||||||  ||||||||| || || |||| ||||||||||||||||| | || |    
T  28699354 tgagtcggtttagtttgggtttgaccaaccttaagatccgaatcatatagggtgctccggtttgggtaaggtaaagtaaccacccgttatatattgggtt 28699453  T
Q  146 gagtttggttaaacccgctaatttttgggttgggttgg 183  Q
    | ||| || | ||||| ||||||| ||| |||||||||    
T  28699454 gggttgggct-aacccactaatttctggtttgggttgg 28699490  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 4773878 - 4773992
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 189  Q
    |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| |||||||  || |||| |||| |||      
T  4773878 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggttggg 4773977  T
Q  190 taatgggttacccaa 204  Q
    || ||||||||||||    
T  4773978 tagtgggttacccaa 4773992  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 396890 - 397004
Alignment:
Q  90 atatagggtattccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacccgctaatttttgggttgggttggattgaa 189  Q
    |||||||||| ||||||||| || || ||||||| |||||||||| || | ||| || ||||||  |||||| |||||||| || |||| |||| |||      
T  396890 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggttggg 396989  T
Q  190 taatgggttacccaa 204  Q
    || ||||||||||||    
T  396990 tagtgggttacccaa 397004  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 245927 - 245879
Alignment:
Q  139 attggatgagtttggttaaacccgctaatttttgggttgggttggattg 187  Q
    ||||||| ||||||  |||||||| ||||||||||||| ||||||||||    
T  245927 attggataagtttgaataaacccgttaatttttgggtttggttggattg 245879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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