View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5831_low_1 (Length: 634)
Name: NF5831_low_1
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 13 - 619
Target Start/End: Original strand, 47716962 - 47717565
Alignment:
| Q |
13 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |
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| T |
47716962 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttct---at |
47717058 |
T |
|
| Q |
113 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatttttctttgccat |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47717059 |
atcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataactattggcttccatttttctttgccat |
47717158 |
T |
|
| Q |
213 |
ctgtttcttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtc |
312 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47717159 |
ctgtctcttttggaattactgcttctaggttgtctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcgtc |
47717258 |
T |
|
| Q |
313 |
aaaattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
412 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47717259 |
aaaattatcctgcatccataccacgacttagacagtctaacaaatttaggaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
47717358 |
T |
|
| Q |
413 |
tatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgatttgcttttttctgtaaaatga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47717359 |
tatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgatttgcttttttctgtaaaatga |
47717458 |
T |
|
| Q |
513 |
tacatttcaaagattaagaatagtaaaataataccaacaaacaaggtctataatgactaactaatgagaaaaactccaagaaaggaacaagtaaaacaag |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
47717459 |
tacatttcaaagattaagaatagtaaaataataccaacaaacaaggtctataatgactaactaatgagaaaaactccaagaaaggaacgagtaaaacaag |
47717558 |
T |
|
| Q |
613 |
accacct |
619 |
Q |
| |
|
||||||| |
|
|
| T |
47717559 |
accacct |
47717565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 612
Target Start/End: Original strand, 47744755 - 47745347
Alignment:
| Q |
13 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47744755 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgacgcagtgatttcaatatcattattttcatcttcttttat |
47744854 |
T |
|
| Q |
113 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatttttctttgccat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| | |
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|
| T |
47744855 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaaca--ttgtacaaa--ggcttccatttttctttgcctt |
47744950 |
T |
|
| Q |
213 |
ctgtttcttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtc |
312 |
Q |
| |
|
|||| | |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
47744951 |
ctgtctatttttgaattactgcatctaggttttctctttttgaatgcaaaactttgttaaccatcacaacttattattatgaagtagattttatgtcgtc |
47745050 |
T |
|
| Q |
313 |
aaaattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||| |||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
47745051 |
aaaattatcctgcattcataccacgacttagacag--taacgaatttagacaaagtcacgtaccttggagatttatctttgccttccttttccttaagca |
47745148 |
T |
|
| Q |
413 |
tatgcaaatgaaaattagcagg---gaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgatttgcttttttctgtaaaa |
509 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47745149 |
tatgcaaatgaaaattagcaggccagcagcagcaacaacaacaacagtcggcacaactgtggcga---tagtatgtgatgatttgcttttttctgtaaaa |
47745245 |
T |
|
| Q |
510 |
tgatacatttcaaagattaagaatagtaaaataataccaacaaacaaggtctataatgactaactaatgagaaaaactccaagaaaggaacaagtaaaac |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||| |||| |||||| | ||||||||||||| |
|
|
| T |
47745246 |
tgatacatttcaaagattaagaatagtaaaatattaccaacaaacaa-gtctacaacgactaactaatgaataaaatgccaagataagaacaagtaaaac |
47745344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 220 - 619
Target Start/End: Original strand, 47759276 - 47759677
Alignment:
| Q |
220 |
ttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaa----- |
314 |
Q |
| |
|
|||| |||||||| | ||||| |||| | |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
47759276 |
tttttgaattactacatctagttttttt-tatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactc |
47759374 |
T |
|
| Q |
315 |
--aattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
412 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
47759375 |
aaaattatcctgagttcataccacgatttagacagtctactgaatttagacaaagtcacacaccttcgagatttatccttgccttccttttccttaagca |
47759474 |
T |
|
| Q |
413 |
tatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgatttgcttttttctgtaaaatga |
512 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47759475 |
tatgcaaataaaaattagcagggcggcaacaacaacaacaacagtcggcacaactatggcgatggtagtatgtgatgatttgcttttttctgcaaaatga |
47759574 |
T |
|
| Q |
513 |
tacatttcaaagattaagaatagtaaaataataccaacaaacaaggtctataatgactaactaatgagaaaaactccaagaaaggaacaagtaaaacaag |
612 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| | |||||||||||||| | |
|
|
| T |
47759575 |
gacatttcaaag-ttaag---agtaaaataataccaacaaacaaggtctataacgactaactaatgagaaaaagtcaaagataagaacaagtaaaacatg |
47759670 |
T |
|
| Q |
613 |
accacct |
619 |
Q |
| |
|
||||||| |
|
|
| T |
47759671 |
accacct |
47759677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 47712207 - 47712524
Alignment:
| Q |
13 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
112 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||| ||| |
|
|
| T |
47712207 |
tattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcagcgatttcaatatcatcattatcattttcttctat |
47712306 |
T |
|
| Q |
113 |
atcttcaaacattgtacaaggcatgttaggaaa--------------atatgctaatatctaatttttaaaatcaaaatacttataacaattggcttcca |
198 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||| || |||||| |||| |
|
|
| T |
47712307 |
ttcttcaaacatgatacaaggcatgttagtaaagtaaaaatagaaaaatatgctaatatctaatttttaaaataaaaaaacttatgactattggcgtcca |
47712406 |
T |
|
| Q |
199 |
tttttctttgccatctgtt-tcttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattat--tatgaa |
295 |
Q |
| |
|
||||||||| || | | || | |||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
47712407 |
tttttctttccctttttttctatttttgaattattgcatctaggttttctctatttgaatgcaaaa---tgttaaccatcacaacttattattatatgaa |
47712503 |
T |
|
| Q |
296 |
gtaaattttatgtcgtcaaaa |
316 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
47712504 |
gtagattttatgtcttcaaaa |
47712524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 392 - 582
Target Start/End: Original strand, 47712559 - 47712745
Alignment:
| Q |
392 |
tgccttccttttccttacgcatatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgat |
491 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
47712559 |
tgccttccttttccttaagcatatgcaaatgaaaattagcagggcagcaacaacaac---agcagttggcacaactatggcgacggtagtatgtgatgat |
47712655 |
T |
|
| Q |
492 |
ttgcttttttctgtaaaatgatacatttcaaagattaagaatagtaaaataataccaacaaacaaggtctataatgactaactaatgagaa |
582 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||| |
|
|
| T |
47712656 |
ttgcttttttctgcaaaatgagacatttcaaagattaagaatagtaaaataataccaaccgac-atgtctataacgactaactaatgagaa |
47712745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 47759105 - 47759233
Alignment:
| Q |
13 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| || |||||||||| || || ||||||| || |
|
|
| T |
47759105 |
tattagcttcagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgat |
47759204 |
T |
|
| Q |
113 |
atcttcaaacattgtacaaggcatgttag |
141 |
Q |
| |
|
|||||||| || ||||||||||||||| |
|
|
| T |
47759205 |
ttcttcaaaaatgatacaaggcatgttag |
47759233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 227 - 334
Target Start/End: Original strand, 47713896 - 47714004
Alignment:
| Q |
227 |
attactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcaca--acttattattatgaagtaaattttatgtcgtcaaaattat--cc |
322 |
Q |
| |
|
|||||||| |||||||||| | |||||||| |||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||| || |
|
|
| T |
47713896 |
attactgcatctaggttttttatatttgaaagcaacgctttgttaatcatcacacaacttattattatgaag---attttatgtcgtcaaaactatagcc |
47713992 |
T |
|
| Q |
323 |
tgcattcatacc |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47713993 |
tgcattcatacc |
47714004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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