View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_low_13 (Length: 353)
Name: NF5831_low_13
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 44499323 - 44499604
Alignment:
| Q |
5 |
cggcgttggttttgctctgttctcctccgtaactgctcagattcgcacctctctcctccgattgttctccaatttcgttcgattctccagatcttgaagc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44499323 |
cggcgttggttttgctctgttctcctccgtaactgctcagattcgcacctctctcctccgattgttctccaatttcgttcgattctccagatcttgaagc |
44499422 |
T |
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| Q |
105 |
ttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgagcgtggtttctcttcttgctttgaaggttttatggcgttgct |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44499423 |
ttacctttctagcttttcactgcgcaggttttatcagtttcttctctttgtttgttcagcgtggtttctcttcttgcattgaaggttttatggcgttgct |
44499522 |
T |
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| Q |
205 |
ttgtagtcttgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatgaaggaggatgagaagacaaaagg |
286 |
Q |
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| T |
44499523 |
ttgtagtcctgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatgaaggaggatgagaagacaaaagg |
44499604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 39057113 - 39057072
Alignment:
| Q |
238 |
ggttcggtcttgttgttgtaaaaatgaaggaggatgagaaga |
279 |
Q |
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| T |
39057113 |
ggttcggtcttgttgtcgtgaaaatgaaggaggaagagaaga |
39057072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24191886 - 24191645
Alignment:
| Q |
1 |
cttccggcgttggttttgctctgttctcctccgtaactgctcagattcgcacctctctcctccgattgttctccaatttcgttcgattctccagatcttg |
100 |
Q |
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| T |
24191886 |
cttccggcgttggttttgctccattctcctccgtaactgcttagattcgcacctctctcctccgattgttctccaatttcggtcgattctccagatcttg |
24191787 |
T |
|
| Q |
101 |
aagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgagcgtggtttctcttcttgctttgaaggttttatggcgt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24191786 |
aagcttacctttctagcttttcactgcgcaggttttatcagtttcttctctttgtttgttcagcgtggtttctcttcttgctttgaaggttttatggcgt |
24191687 |
T |
|
| Q |
201 |
tgctttgtagtcttgctccgttcgtgaggttcgttccggttc |
242 |
Q |
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| T |
24191686 |
tgctttgtagtcttgctccgttcgtgaggttcgttccggttc |
24191645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 44376069 - 44376354
Alignment:
| Q |
1 |
cttccggcgttggttttgctctgttctcctccgtaactgctcagattcgcacctctctcctccgattgttctccaatttcgttcgattctccagatcttg |
100 |
Q |
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| T |
44376069 |
cttccggcgttggttttgctccgttctcctccgtaactgctcagattcgcacctctctcctccgactgttctccaatttcggtcgattctccggatctcg |
44376168 |
T |
|
| Q |
101 |
aagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgagcgtggtttctcttcttgctttgaaggttttatggcgt |
200 |
Q |
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|||||||||||||| ||||||| ||| |||||||||||||| ||||||||| | | ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
44376169 |
aagcttacctttctggcttttccctgcgcaggttttatcagcttcttctctctatctgtccagcgtggtttctcttcatgctttgaaggttttatggcgt |
44376268 |
T |
|
| Q |
201 |
tgctttgtagtcttgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatgaaggaggatgagaagacaaaagg |
286 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
44376269 |
tgctttgtagtcttgctctgttcgtgaggttcgttccggttcggtcttgttgtcgtaaaaatgaaggaggatgagaaaacaaaagg |
44376354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 44384936 - 44385221
Alignment:
| Q |
1 |
cttccggcgttggttttgctctgttctcctccgtaactgctcagattcgcacctctctcctccgattgttctccaatttcgttcgattctccagatcttg |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| | |
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| T |
44384936 |
cttccggcgttggttttgctccgttctcctccgtaactgctcagattcgcacctctctcctccgactgttctccaatttcggtcgattctccggatctcg |
44385035 |
T |
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| Q |
101 |
aagcttacctttctagcttttcactgtgcaggttttatcagtttcttctctttgtttgttgagcgtggtttctcttcttgctttgaaggttttatggcgt |
200 |
Q |
| |
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|||||||||||||| ||||||| ||| |||||||||||||| ||||||||| | | ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
44385036 |
aagcttacctttctggcttttccctgcgcaggttttatcagcttcttctctctatctgtccagcgtggtttctcttcatgctttgaaggttttatggcgt |
44385135 |
T |
|
| Q |
201 |
tgctttgtagtcttgctccgttcgtgaggttcgttccggttcggtcttgttgttgtaaaaatgaaggaggatgagaagacaaaagg |
286 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
44385136 |
tgctttgtagtcttgctctgttcgtgaggttcgttccggttcggtcttgttgtcgtaaaaatgaaggaggatgagaaaacaaaagg |
44385221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 27184268 - 27184348
Alignment:
| Q |
156 |
ttgttgagcgtggtttctcttcttgctttgaaggttttatggcgttgctttgtagtcttgctccgttcgtgaggttcgttc |
236 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| ||||||||||||| || |||| ||| |||||||||||| |
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| T |
27184268 |
ttgtcgagcgtggtttctcttctttctttgaaggttttcccatgttgctttgtagtatttctccattcatgaggttcgttc |
27184348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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