View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_low_15 (Length: 293)
Name: NF5831_low_15
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 1795608 - 1795336
Alignment:
| Q |
17 |
tgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaagg |
116 |
Q |
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| T |
1795608 |
tgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaagg |
1795509 |
T |
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| Q |
117 |
accttctgctgatttccatttcaccataacatttttggatataactcatctcaccatgatgcaatgatccctttaagttgattttttctacaaaaactgc |
216 |
Q |
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| T |
1795508 |
accttctgctgatttccatttcaccataacatttttggatataactcatctcaccatgatgcaatgatccctttaagttgattttttctacaaaaactgc |
1795409 |
T |
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| Q |
217 |
atgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttgaacaagtattatctacc |
289 |
Q |
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| T |
1795408 |
atgaccttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttgaacaagtattttctacc |
1795336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 6231911 - 6232166
Alignment:
| Q |
17 |
tgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaagg |
116 |
Q |
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| T |
6231911 |
tgttctttattattggctttacttatttgtagttatttattatcttccaatgattgataactagttattgtgattcgcatttcgcatcttccaagcaagg |
6232010 |
T |
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| Q |
117 |
accttctgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagttgattttttctacaaaaa |
212 |
Q |
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| T |
6232011 |
accttctgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcagtgatcccttcaagttgattttttctacaaaag |
6232110 |
T |
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| Q |
213 |
ctgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct |
268 |
Q |
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| T |
6232111 |
ctgcatgatctttgtatcaatgggcattgctaccttgcaatgttttcaagctgtct |
6232166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 5185398 - 5185654
Alignment:
| Q |
17 |
tgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaagg |
116 |
Q |
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| T |
5185398 |
tgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttattgtgattcgcattttgcatcttccaagcaagg |
5185497 |
T |
|
| Q |
117 |
accttc-tgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagttgattttttctacaaaa |
211 |
Q |
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| T |
5185498 |
accttcttgctgatttccattttaccataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagttgattttttctacaaaa |
5185597 |
T |
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| Q |
212 |
actgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct |
268 |
Q |
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| T |
5185598 |
gctgcatgatcttcgtatcaatgggcattgctaccttgcaatgttttcaagctgtct |
5185654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 5058948 - 5058903
Alignment:
| Q |
27 |
tattggctttacttatttgtagttctttattatcttccaatgattg |
72 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5058948 |
tattagctatacttatttgtagttctttattatcttccaatgattg |
5058903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 5198243 - 5198196
Alignment:
| Q |
28 |
attggctttacttatttgtagttctttattatcttccaatgattgata |
75 |
Q |
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| T |
5198243 |
attggatttgcttatttgcagttctttattatcttccaatgatcgata |
5198196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 5179088 - 5179344
Alignment:
| Q |
17 |
tgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaagg |
116 |
Q |
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| T |
5179088 |
tgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactacttattatgattcacatttcgcatcttccaaacaagg |
5179187 |
T |
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| Q |
117 |
accttctgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagttga-ttttttctacaaaa |
211 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||| || || | ||||||||||||||||||||||| |||||||||||||| |
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| T |
5179188 |
accttctgctgatttccattttgtcagaacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgatttttttctacaaaa |
5179287 |
T |
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| Q |
212 |
actgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct |
268 |
Q |
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| T |
5179288 |
gctgcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtct |
5179344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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