View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5831_low_16 (Length: 280)
Name: NF5831_low_16
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_16 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 36939702 - 36939436
Alignment:
| Q |
14 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939702 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
36939603 |
T |
|
| Q |
114 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939602 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
36939503 |
T |
|
| Q |
214 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccct |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939502 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccct |
36939436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 36941422 - 36941682
Alignment:
| Q |
14 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
36941422 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
36941521 |
T |
|
| Q |
114 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
213 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36941522 |
aaacccattccacaatgtttatttcattttcttgagcatta------attattggttttcttccacaagctatctctaaagcaacaattccaaaactata |
36941615 |
T |
|
| Q |
214 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccct |
280 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36941616 |
cacatcggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccct |
36941682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
182 |
gctatctctaaagcaacaataccaaaactatacacgtctgtttctttactagctcttcct |
241 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||| ||| | |||||||||||| |||||| |
|
|
| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University