View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_low_20 (Length: 245)
Name: NF5831_low_20
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_20 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36939262 - 36939036
Alignment:
| Q |
1 |
tctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaatgtctaaactaccatttggcatgtactcatatacaagtaaa |
100 |
Q |
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| T |
36939262 |
tctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaatgtctaaactaccatttggcatgtactcatatacaagtaaa |
36939163 |
T |
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| Q |
101 |
agcttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaatagttgttacttctgatgcgaactcttttatccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
36939162 |
agcttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaataattgttacttctgatgcgaactcctttattcctt |
36939063 |
T |
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| Q |
201 |
gatgtgaatcttctgacaccctcttaa |
227 |
Q |
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| T |
36939062 |
gatgtgaatcttctgacaccctcttaa |
36939036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 36941858 - 36942083
Alignment:
| Q |
3 |
tagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaatgtctaaactaccatttggcatgtactcatatacaagtaaaag |
102 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| || || |
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| T |
36941858 |
tagctattgtatatctaacaccccatttcaacaaactttgtttcttgaaaagatgaatgtctaaactaccatttggcatgtactcatacacaagcaagag |
36941957 |
T |
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| Q |
103 |
cttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaatagttgttacttctgatgcgaactcttttatcccttga |
202 |
Q |
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| T |
36941958 |
ttttttcctttgatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaattatcgttacttctgatgcaaattcctttatcccttga |
36942057 |
T |
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| Q |
203 |
tgtgaatcttctgacaccctcttaat |
228 |
Q |
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| T |
36942058 |
tgagaatcttctgacacactcttaat |
36942083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 19153 - 19222
Alignment:
| Q |
60 |
tgtctaaactaccatttggcatgtactcatatacaagtaaaagcttttttctttcatgacaccaaccaat |
129 |
Q |
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| T |
19153 |
tgtctaaacttccatttggcatgaactcataaacaaggagaagctctttactttcatagcaccaaccaat |
19222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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