View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_low_25 (Length: 229)
Name: NF5831_low_25
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5237630 - 5237419
Alignment:
| Q |
1 |
atattataaaactatcgtcatcaatattcgaacttgaaacctaacaattgcgtatatggtttttgttgagtcttggattggtttgaggattgcaacaggc |
100 |
Q |
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| T |
5237630 |
atattataaaactatcttcacccatattcgaacttgaaacctaataattgcgtatatggttttagttgagtcttggtttgg-----ggtttgcaacaggc |
5237536 |
T |
|
| Q |
101 |
attctagttcctcatttcattttaacaatgaagagttcttggggtaatgtctattttgattttgtcgatcaagttattcataaattgttgaggtgcacac |
200 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5237535 |
attctatttccttatttcattttaacaatgaagagttcttggggtaatgtctattttgattttgtcgatcaagttattcacaaattgttgaggtgcacac |
5237436 |
T |
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| Q |
201 |
tcaaaaaaggaataaat |
217 |
Q |
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||||| ||||||||||| |
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| T |
5237435 |
tcaaacaaggaataaat |
5237419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 14461953 - 14462092
Alignment:
| Q |
78 |
ttggtttgaggattgcaacaggcattctagttcctcatttcattttaacaatgaagagttcttggggtaatgtctattttgattttgtcgatcaagttat |
177 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
14461953 |
ttggtttggggtttgcaacaggcattctagttccttatttcattttaacaatgaagagttcttggggtgatgtctattttgattttgtcaatcaagttat |
14462052 |
T |
|
| Q |
178 |
tcataaattgttgaggtgcacactcaaaaaaggaataaat |
217 |
Q |
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||| || |||||||||||||||| |||| ||||||||||| |
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| T |
14462053 |
tcacaagttgttgaggtgcacacacaaacaaggaataaat |
14462092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 14493018 - 14492879
Alignment:
| Q |
78 |
ttggtttgaggattgcaacaggcattctagttcctcatttcattttaacaatgaagagttcttggggtaatgtctattttgattttgtcgatcaagttat |
177 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |
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|
| T |
14493018 |
ttggtttggggtttgcaacaggcattctagttccttatttcattttaacaatgaagagttcttggggtgatgtctattttggttttgtggatcaagttat |
14492919 |
T |
|
| Q |
178 |
tcataaattgttgaggtgcacactcaaaaaaggaataaat |
217 |
Q |
| |
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||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
14492918 |
tcacaaattgttaaggtgcacactcaaacaaggaataaat |
14492879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 14458335 - 14458474
Alignment:
| Q |
78 |
ttggtttgaggattgcaacaggcattctagttcctcatttcattttaacaatgaagagttcttggggtaatgtctattttgattttgtcgatcaagttat |
177 |
Q |
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|
|||||||| || ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
14458335 |
ttggtttggggtttgcatcaggcattctagttccttttatcattttaacaatgaagagttcttggggtgatgtctactttgattttgtcgatcaagttat |
14458434 |
T |
|
| Q |
178 |
tcataaattgttgaggtgcacactcaaaaaaggaataaat |
217 |
Q |
| |
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||| || || |||| || ||| | |||| ||||||||||| |
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|
| T |
14458435 |
tcaaaagttattgaagttcactcacaaacaaggaataaat |
14458474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 14468609 - 14468509
Alignment:
| Q |
78 |
ttggtttgaggattgcaacaggcattctagttcctcatttcattttaacaatgaagagttcttggggtaatgtctattttgattttgtcgatcaagttat |
177 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||| |||| ||||| |||||||||| || ||| || ||| ||||||||| ||| | |||||| |||| |
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| T |
14468609 |
ttggtttggggtttgcaacaggcactctagttccttattttgttttagcaatgaagagatcctggagtgatgcctattttgactttctggatcaatttat |
14468510 |
T |
|
| Q |
178 |
t |
178 |
Q |
| |
|
| |
|
|
| T |
14468509 |
t |
14468509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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