View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_low_27 (Length: 224)
Name: NF5831_low_27
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 34695268 - 34695475
Alignment:
| Q |
1 |
agaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgacatagggagaagctttaaaatgcccgcttcaagcttttctctagttataaaat |
100 |
Q |
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| T |
34695268 |
agaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgatatagggagaagctttaaaatgcctgcttgaagcttttc-ctgactatatgat |
34695366 |
T |
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| Q |
101 |
gtgattgatttta------gaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaattatac |
194 |
Q |
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| T |
34695367 |
g--aataattataagatgtgaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaattatac |
34695464 |
T |
|
| Q |
195 |
atgacattgtt |
205 |
Q |
| |
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||||||||||| |
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| T |
34695465 |
atgacattgtt |
34695475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 34717680 - 34717887
Alignment:
| Q |
1 |
agaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgacatagggagaagctttaaaatgcccgcttcaagcttttctctagttataaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| || |||| || |
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| T |
34717680 |
agaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgatatagggagaagctttaaaatgcctgcttgaagcttttc-ctgactatatgat |
34717778 |
T |
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| Q |
101 |
gtgattgatttta------gaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaattatac |
194 |
Q |
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| T |
34717779 |
g--aataattataagatgtgaatgtttcatgcaaaatcttgatgaaaactacaatgaaacctttaatttagtcataatacttaaatgtgtttaattatac |
34717876 |
T |
|
| Q |
195 |
atgacattgtt |
205 |
Q |
| |
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||||||||||| |
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| T |
34717877 |
atgacattgtt |
34717887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 44666344 - 44666431
Alignment:
| Q |
2 |
gaagcaatgacttagtgaaacaatcagcaacttgatcctgagatgacatagggagaagctttaaaatgcccgcttcaagcttttctct |
89 |
Q |
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||||||| |||||||||||| ||||||||| |||||| ||||| || | ||| ||||| || |||||||| |||| ||| |||||||| |
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| T |
44666344 |
gaagcaaggacttagtgaaaaaatcagcaagttgatcttgagaagaaacaggcagaagtttcaaaatgccagcttgaagtttttctct |
44666431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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