View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5831_low_3 (Length: 549)
Name: NF5831_low_3
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 281 - 546
Target Start/End: Original strand, 44499085 - 44499350
Alignment:
| Q |
281 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
380 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44499085 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggcggcgctgaagggat |
44499184 |
T |
|
| Q |
381 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
44499185 |
gggcgaagactataggaatggtggtggttgcatgacggcggcgtggcgcaacggagaacgaccctttcgtggaagggagattagttttgaagagaaaatt |
44499284 |
T |
|
| Q |
481 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgctcctcc |
546 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||| |
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| T |
44499285 |
gatggacagattcgcacagatgacctttcttctcctttcggcgttggttttgctctgttctcctcc |
44499350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 44498851 - 44499016
Alignment:
| Q |
20 |
aattcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaatt |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44498851 |
aattcatctcaattttctctgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaatt |
44498950 |
T |
|
| Q |
120 |
gattttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaac |
185 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44498951 |
gattttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaac |
44499016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 281 - 535
Target Start/End: Complemental strand, 24192119 - 24191866
Alignment:
| Q |
281 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |
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| T |
24192119 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagataagaacagaggtgcagggcgacgctgaagggat |
24192020 |
T |
|
| Q |
381 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
480 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24192019 |
gggcgaaaactataggaatggtggtgg-tgcatgacggcggcgtggcgcaacggagaacgaccctttcgtggaagggagatcagttttgaagagaaaatt |
24191921 |
T |
|
| Q |
481 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctc |
535 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
24191920 |
gatggacagattcgcacaggagacctttcttctccttccggcgttggttttgctc |
24191866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 24192376 - 24192211
Alignment:
| Q |
21 |
attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24192376 |
attcatctcaattttctctgtcaacatgattctgagttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
24192277 |
T |
|
| Q |
121 |
attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca |
186 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
24192276 |
attttcattctcgtcaatgttgatacccatttaactttcttttaattataccacaaggctaaaaca |
24192211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 281 - 546
Target Start/End: Original strand, 44375835 - 44376100
Alignment:
| Q |
281 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
380 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
44375835 |
aaacattcaatacaatagtaaccagaaacaacagagtatcaaatccaatttatgaacaaaccaagacaagaacagaggtgcagggccgcgctaaagggat |
44375934 |
T |
|
| Q |
381 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
480 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
44375935 |
gggcgaagactatagggatggtggtggttgcatgacggcggggtgacgcgacggagaacgaccctttcgtagaagggagatcagttttgaagagaaaatt |
44376034 |
T |
|
| Q |
481 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgctcctcc |
546 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
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|
| T |
44376035 |
gatcgacatattcgcacaggtgacctttcttctccttccggcgttggttttgctccgttctcctcc |
44376100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 281 - 546
Target Start/End: Original strand, 44384702 - 44384967
Alignment:
| Q |
281 |
aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat |
380 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
44384702 |
aaacattcaatacaatagtaaccagaaacaacagagtatcaaatccaatttatgaacaaaccaagacaagaacagaggtgcagggccgcgctaaagggat |
44384801 |
T |
|
| Q |
381 |
gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt |
480 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
44384802 |
gggcgaagactatagggatggtggtggttgcatgacggcggggtgacgcgacggagaacgaccctttcgtagaagggagatcagttttgaagagaaaatt |
44384901 |
T |
|
| Q |
481 |
gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgctcctcc |
546 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
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|
| T |
44384902 |
gatcgacatattcgcacaggtgacctttcttctccttccggcgttggttttgctccgttctcctcc |
44384967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 44375578 - 44375743
Alignment:
| Q |
21 |
attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
120 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
44375578 |
attcatctcaattttctatgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaacatcataacccattgaattg |
44375677 |
T |
|
| Q |
121 |
attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca |
186 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375678 |
attttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaaca |
44375743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 44384445 - 44384610
Alignment:
| Q |
21 |
attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg |
120 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
44384445 |
attcatctcaattttctatgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaacatcataacccattgaattg |
44384544 |
T |
|
| Q |
121 |
attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca |
186 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44384545 |
attttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaaca |
44384610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 19239212 - 19239127
Alignment:
| Q |
82 |
tagagaaaataatttagaaaatcataacccattgaattga----ttttcattctcgtcaatatcgatacccatttaactttctttt |
163 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||| || ||||||||||||||||||||| |
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|
| T |
19239212 |
tagagaagataatttagaaaatcataacccattaaattgaatggatttcattctcatcaatgtcaatacccatttaactttctttt |
19239127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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