View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5831_low_5 (Length: 487)

Name: NF5831_low_5
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5831_low_5
NF5831_low_5
[»] chr4 (27 HSPs)
chr4 (322-481)||(32858123-32858281)
chr4 (20-234)||(32858369-32858581)
chr4 (131-231)||(43739511-43739612)
chr4 (173-235)||(50729519-50729582)
chr4 (177-234)||(37859240-37859298)
chr4 (176-235)||(9947975-9948035)
chr4 (173-231)||(3649686-3649745)
chr4 (129-184)||(9948050-9948105)
chr4 (173-235)||(52673857-52673920)
chr4 (197-231)||(21098584-21098618)
chr4 (193-231)||(21202789-21202827)
chr4 (195-232)||(22318384-22318421)
chr4 (110-167)||(47741407-47741464)
chr4 (195-231)||(4325841-4325877)
chr4 (195-231)||(6776628-6776664)
chr4 (195-235)||(7554957-7554997)
chr4 (195-235)||(12600932-12600972)
chr4 (195-231)||(16320569-16320605)
chr4 (195-235)||(21580072-21580112)
chr4 (195-231)||(23521930-23521966)
chr4 (195-231)||(28115302-28115338)
chr4 (195-231)||(33177032-33177068)
chr4 (195-231)||(37931970-37932006)
chr4 (173-232)||(38486234-38486294)
chr4 (195-231)||(38812570-38812606)
chr4 (195-231)||(47361413-47361449)
chr4 (195-231)||(55065333-55065369)
[»] chr1 (20 HSPs)
chr1 (190-234)||(35335958-35336002)
chr1 (91-168)||(40610865-40610942)
chr1 (191-231)||(504469-504509)
chr1 (173-228)||(6771427-6771483)
chr1 (195-231)||(16451183-16451219)
chr1 (173-231)||(6029360-6029419)
chr1 (195-234)||(13994157-13994196)
chr1 (173-231)||(45490934-45490993)
chr1 (195-231)||(1351517-1351553)
chr1 (195-231)||(1601229-1601265)
chr1 (190-234)||(3560227-3560271)
chr1 (150-182)||(6771497-6771529)
chr1 (195-231)||(16437418-16437454)
chr1 (195-231)||(25539911-25539947)
chr1 (175-234)||(26733608-26733668)
chr1 (195-231)||(31004188-31004224)
chr1 (195-235)||(41967931-41967971)
chr1 (195-231)||(42510581-42510617)
chr1 (195-231)||(45658877-45658913)
chr1 (195-231)||(51264551-51264587)
[»] chr3 (15 HSPs)
chr3 (173-234)||(14155439-14155500)
chr3 (195-235)||(50678842-50678882)
chr3 (194-235)||(42547370-42547411)
chr3 (195-235)||(21221361-21221401)
chr3 (195-231)||(39052839-39052875)
chr3 (186-231)||(45871453-45871500)
chr3 (173-235)||(19906806-19906869)
chr3 (173-235)||(25860399-25860462)
chr3 (175-231)||(49748891-49748948)
chr3 (195-235)||(1344708-1344748)
chr3 (195-231)||(21373978-21374014)
chr3 (195-231)||(28675838-28675874)
chr3 (195-231)||(29584923-29584959)
chr3 (195-231)||(38213402-38213438)
chr3 (195-231)||(51925209-51925245)
[»] chr8 (12 HSPs)
chr8 (176-227)||(10932787-10932838)
chr8 (150-231)||(32303561-32303643)
chr8 (195-235)||(6386619-6386659)
chr8 (195-235)||(37618414-37618454)
chr8 (173-235)||(7394813-7394876)
chr8 (173-231)||(17520642-17520700)
chr8 (195-231)||(8673077-8673113)
chr8 (195-235)||(10656708-10656748)
chr8 (195-231)||(15001513-15001549)
chr8 (195-231)||(29563248-29563284)
chr8 (195-231)||(29672345-29672381)
chr8 (191-235)||(36426265-36426309)
[»] chr5 (12 HSPs)
chr5 (95-182)||(26180184-26180270)
chr5 (195-231)||(553444-553480)
chr5 (195-235)||(41790475-41790515)
chr5 (203-235)||(700622-700654)
chr5 (195-231)||(4689711-4689747)
chr5 (195-231)||(5571657-5571693)
chr5 (195-231)||(5673186-5673222)
chr5 (195-231)||(6284311-6284347)
chr5 (195-235)||(7208243-7208283)
chr5 (195-231)||(8136884-8136920)
chr5 (195-231)||(32528762-32528798)
chr5 (195-235)||(39918550-39918590)
[»] chr2 (23 HSPs)
chr2 (95-186)||(40876507-40876598)
chr2 (174-235)||(30326317-30326378)
chr2 (195-235)||(4641559-4641599)
chr2 (88-184)||(38623180-38623276)
chr2 (195-235)||(40832476-40832516)
chr2 (195-235)||(44284672-44284712)
chr2 (195-230)||(83315-83350)
chr2 (195-230)||(8112348-8112383)
chr2 (195-234)||(10399877-10399916)
chr2 (195-234)||(18126995-18127034)
chr2 (150-184)||(25383255-25383289)
chr2 (150-231)||(37003829-37003911)
chr2 (186-235)||(38786528-38786576)
chr2 (195-235)||(7258940-7258980)
chr2 (195-235)||(7761580-7761620)
chr2 (195-231)||(9732937-9732973)
chr2 (195-235)||(16104317-16104357)
chr2 (195-235)||(16177890-16177930)
chr2 (195-231)||(18685883-18685919)
chr2 (195-231)||(37308702-37308738)
chr2 (195-235)||(41366117-41366157)
chr2 (195-231)||(42706406-42706442)
chr2 (195-231)||(45463117-45463153)
[»] chr7 (13 HSPs)
chr7 (175-231)||(8360603-8360660)
chr7 (195-235)||(17237123-17237163)
chr7 (148-228)||(35645501-35645581)
chr7 (195-235)||(47316706-47316746)
chr7 (173-231)||(11822274-11822333)
chr7 (173-226)||(29372764-29372818)
chr7 (195-231)||(1870186-1870222)
chr7 (195-231)||(11250668-11250704)
chr7 (195-231)||(21784922-21784958)
chr7 (195-231)||(23349299-23349335)
chr7 (195-231)||(30849254-30849290)
chr7 (195-235)||(32873777-32873817)
chr7 (173-228)||(43189227-43189283)
[»] chr6 (16 HSPs)
chr6 (175-235)||(7396151-7396211)
chr6 (195-235)||(10324157-10324197)
chr6 (195-235)||(11279171-11279211)
chr6 (173-228)||(24785105-24785161)
chr6 (192-231)||(8342636-8342675)
chr6 (173-231)||(18597181-18597240)
chr6 (173-235)||(29054399-29054462)
chr6 (181-231)||(4064325-4064375)
chr6 (173-235)||(11382107-11382168)
chr6 (176-234)||(29202952-29203012)
chr6 (195-231)||(166969-167005)
chr6 (195-231)||(1004472-1004508)
chr6 (206-234)||(2122767-2122795)
chr6 (195-231)||(3932853-3932889)
chr6 (195-231)||(14808047-14808083)
chr6 (195-231)||(31870146-31870182)
[»] scaffold0650 (1 HSPs)
scaffold0650 (173-231)||(1633-1692)
[»] scaffold0595 (1 HSPs)
scaffold0595 (192-231)||(6928-6967)
[»] scaffold0729 (1 HSPs)
scaffold0729 (195-231)||(4592-4628)
[»] scaffold0360 (1 HSPs)
scaffold0360 (195-231)||(15394-15430)
[»] scaffold0169 (2 HSPs)
scaffold0169 (195-231)||(12549-12585)
scaffold0169 (195-231)||(18067-18103)
[»] scaffold0027 (1 HSPs)
scaffold0027 (195-235)||(15215-15255)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 322 - 481
Target Start/End: Complemental strand, 32858281 - 32858123
Alignment:
Q  322 catgtgttattctgtttggtgcttcaaacacaccttatacacattacatctatcttttatcaatcaatgtgatttttcaagagcnnnnnnngtacaaata 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||||    
T  32858281 catgtgttattctgtttggtgcttcaaacacaccttatacacattacatctatcttttatcaatcaatgtgatttttcaagagttttttttgtgcaaata 32858182  T
Q  422 ttttatgagctttttaagtcatgagtattcctattgtttctttcttatgagtattatcta 481  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32858181 ttttatgagc-ttttaagtcatgagtattcctattgtttctttcttatgagtattatcta 32858123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 32858581 - 32858369
Alignment:
Q  20 ataaaaaatagtaacgtaagaaaaaatttacatgtggttcagtcannnnnnnnn---aagggtagtcatgtttaagggtgtgtttgatctggtaaaaaat 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||            |||||||    ||||||||| |||||||||| |||||||||||    
T  32858581 ataaaaaatagtaacgtaagaaaaaatttacatgcggttcagtcatttttttattttaagggta----tgtttaaggttgtgtttgat-tggtaaaaaat 32858487  T
Q  117 aaagaatattatatgacaatttcaattatacaatgtttgatttataaaactgctttagggacatgacacaaactaaaattttgtctctcactaaaccaca 216  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |    
T  32858486 aaagaatatgatatgacaatttcaattgtacaatgtttgatttataaaactgctttagggacataacacaaattaaaattttgtccctcactaaaccata 32858387  T
Q  217 acacaactttttgtctca 234  Q
    ||| ||||||||||||||    
T  32858386 acataactttttgtctca 32858369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 43739612 - 43739511
Alignment:
Q  131 gacaatttcaattatacaatgtttgatttataaaactgctttagggacatgacacaaactaaaatt-ttgtctctcactaaaccacaacacaactttttg 229  Q
    ||||| |||| || || |||||||||||| |||||||| || |||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||| |||||    
T  43739612 gacaacttcagttgtaaaatgtttgatttgtaaaactgtttgagggacatgacaaaaactgaaattattgtccctcaccaaaccacaacacaacattttg 43739513  T
Q  230 tc 231  Q
    ||    
T  43739512 tc 43739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 50729519 - 50729582
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||    
T  50729519 agggacatgacaaaaactgaaatttttgtctatcaccaaaccacagcacaactttttgtctcac 50729582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 37859240 - 37859298
Alignment:
Q  177 acatgacacaaactaaaa-ttttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||||||| ||||||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  37859240 acatgacaaaaactaaaaattttatctctcaataaaccataacacaactttttgtctca 37859298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 9948035 - 9947975
Alignment:
Q  176 gacatgacacaaactaaaatt-ttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||||| ||||||||||| || || ||||||||||||||  |||||||||||||||||    
T  9948035 gacatgacaaaaactaaaattcttatccctcactaaaccacattacaactttttgtctcac 9947975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 3649745 - 3649686
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| |||| ||||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  3649745 agggacaggacaaaaactaaaatttttgtccctcaccaaaccacagcacaactttttgtc 3649686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 9948105 - 9948050
Alignment:
Q  129 atgacaatttcaattatacaatgtttgatttataaaactgctttagggacatgaca 184  Q
    ||||||||||||||| || |||||||||||| |||||||| || ||| ||||||||    
T  9948105 atgacaatttcaattgtataatgtttgatttgtaaaactgtttaaggaacatgaca 9948050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 52673920 - 52673857
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||||||| ||||  ||||||| ||| ||||||||||| |||||||| ||||||||||||    
T  52673920 agggacatgacaaaaacagaaatttttgtccctcactaaacctcaacacaattttttgtctcac 52673857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 21098618 - 21098584
Alignment:
Q  197 ttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||||||||||||| |||||||||||    
T  21098618 ttgtctctcactaaaccacaacataactttttgtc 21098584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 21202827 - 21202789
Alignment:
Q  193 aattttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  21202827 aattttgtccctcaccaaaccacaacacaactttttgtc 21202789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 22318384 - 22318421
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtct 232  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  22318384 ttttgtccctcaccaaaccacaacacaactttttgtct 22318421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 47741464 - 47741407
Alignment:
Q  110 aaaaaataaagaatattatatgacaatttcaattatacaatgtttgatttataaaact 167  Q
    ||||||||||| |||| | ||||||| ||||||| |||||||||| |||| |||||||    
T  47741464 aaaaaataaaggatatgacatgacaacttcaattgtacaatgtttaatttgtaaaact 47741407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 4325877 - 4325841
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  4325877 ttttgtctctcacaaaaccgcaacacaactttttgtc 4325841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 6776664 - 6776628
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  6776664 ttttgtccctcaccaaaccacaacacaactttttgtc 6776628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 7554957 - 7554997
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  7554957 ttttgtccttcactaaaccataacacaactttttgtctcac 7554997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 12600972 - 12600932
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  12600972 ttttgtccctcatcaaaccacaacacaactttttgtctcac 12600932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 16320605 - 16320569
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  16320605 ttttgtccctcaccaaaccacaacacaactttttgtc 16320569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 21580112 - 21580072
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  21580112 ttttgtccctcaccaaaccacatcacaactttttgtctcac 21580072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 23521966 - 23521930
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  23521966 ttttgtccctcaccaaaccacaacacaactttttgtc 23521930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 28115338 - 28115302
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28115338 ttttgtccctcaccaaaccacaacacaactttttgtc 28115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 33177032 - 33177068
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  33177032 ttttgtccctcaccaaaccacaacacaactttttgtc 33177068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 37932006 - 37931970
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  37932006 ttttgtccctcaccaaaccacaacacaactttttgtc 37931970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 38486234 - 38486294
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtct 232  Q
    |||||||||||| ||||| | ||||| ||| ||||| |||||||| |||||||||||||||    
T  38486234 agggacatgacaaaaactcatatttttgtccctcaccaaaccacagcacaactttttgtct 38486294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 38812606 - 38812570
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  38812606 ttttgtccctcaccaaaccacaacacaactttttgtc 38812570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 47361413 - 47361449
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  47361413 ttttgtccctcaccaaaccacaacacaactttttgtc 47361449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 55065333 - 55065369
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  55065333 ttttgtccctcaccaaaccacaacacaactttttgtc 55065369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 35335958 - 35336002
Alignment:
Q  190 taaaattttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  35335958 taaaattttgtctctcactaaagcacaacacaactttttgtctca 35336002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 40610942 - 40610865
Alignment:
Q  91 agggtgtgtttgatctggtaaaaaataaagaatattatatgacaatttcaattatacaatgtttgatttataaaactg 168  Q
    |||||||||||||| |  |||||||| ||| |||| |||||||||||  |||| ||||||||||||||| ||||||||    
T  40610942 agggtgtgtttgatttattaaaaaatgaagtatatgatatgacaattcaaattttacaatgtttgatttgtaaaactg 40610865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 504469 - 504509
Alignment:
Q  191 aaaattttgtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  504469 aaaattttgtctctcactaaaccataacacaattttttgtc 504509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 6771483 - 6771427
Alignment:
Q  173 agggacatgacacaaactaaaatt-ttgtctctcactaaaccacaacacaacttttt 228  Q
    ||||||| |||| ||||||||||| ||||| ||||||||| ||||||||||||||||    
T  6771483 agggacaagacaaaaactaaaattcttgtcactcactaaatcacaacacaacttttt 6771427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 16451219 - 16451183
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| |||||||||||||||||||||||    
T  16451219 ttttgtctctcaccaaaccacaacacaactttttgtc 16451183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 6029360 - 6029419
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| |||| ||||| ||||||| ||| ||||| |||||||||||||||||||||||    
T  6029360 agggacaggacaaaaactgaaatttttgtccctcaccaaaccacaacacaactttttgtc 6029419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 13994157 - 13994196
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  13994157 ttttgtccctcaccaaaccacaacacaactttttgtctca 13994196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 45490934 - 45490993
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||||| ||||| | ||||| ||| ||||| |||||||||||||||||||||||    
T  45490934 agggacatgacaaaaactcatatttttgtccctcaccaaaccacaacacaactttttgtc 45490993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 1351517 - 1351553
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  1351517 ttttgtccctcaccaaaccacaacacaactttttgtc 1351553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 1601265 - 1601229
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  1601265 ttttgtccctcaccaaaccacaacacaactttttgtc 1601229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 3560227 - 3560271
Alignment:
Q  190 taaaattttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||| ||||||| || ||||||||||||||||||||||| |||||    
T  3560227 taaagttttgtcccttactaaaccacaacacaactttttatctca 3560271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 6771529 - 6771497
Alignment:
Q  150 tgtttgatttataaaactgctttagggacatga 182  Q
    ||||||||||||||||||| |||||||||||||    
T  6771529 tgtttgatttataaaactgttttagggacatga 6771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 16437454 - 16437418
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  16437454 ttttgtccctcaccaaaccacaacacaactttttgtc 16437418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 25539947 - 25539911
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  25539947 ttttgtccctcaccaaaccacaacacaactttttgtc 25539911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 26733668 - 26733608
Alignment:
Q  175 ggacatgacacaaactaaaatt-ttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||||||||| ||||| ||||| ||||| | |||||||||| |||||||||||||| ||||    
T  26733668 ggacatgacaaaaactgaaattcttgtcccccactaaaccataacacaactttttgcctca 26733608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 31004224 - 31004188
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  31004224 ttttgtccctcaccaaaccacaacacaactttttgtc 31004188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 41967931 - 41967971
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| || || |||||||||||||||||||||||||||    
T  41967931 ttttgtcccttaccaaaccacaacacaactttttgtctcac 41967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 42510617 - 42510581
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  42510617 ttttgtctctcaccaaaccacagcacaactttttgtc 42510581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 45658913 - 45658877
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  45658913 ttttgtcgctcaccaaaccacaacacaactttttgtc 45658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 51264587 - 51264551
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  51264587 ttttgtccctcaccaaaccacaacacaactttttgtc 51264551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 14155439 - 14155500
Alignment:
Q  173 agggacatgacacaaactaaaattttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||||||||||| ||||| ||||||| || ||||||||| || |||||||||||||||||||    
T  14155439 agggacatgacaaaaactgaaattttatccctcactaaatcataacacaactttttgtctca 14155500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 50678882 - 50678842
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  50678882 ttttgtctctcaccaaaccacaacacaactttttgtctcac 50678842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 42547370 - 42547411
Alignment:
Q  194 attttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  42547370 attttgtctcttactaaactacaacacaactttttgtctcac 42547411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 21221361 - 21221401
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  21221361 ttttgtccctcaccaaaccacaacacaactttttgtctcac 21221401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 39052839 - 39052875
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39052839 ttttgtctctcaccaaaccacaacacaactttttgtc 39052875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 45871500 - 45871453
Alignment:
Q  186 aaactaaaattt--tgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  45871500 aaactaaaatttattgtctctaactaaaccacaacacaactttttgtc 45871453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 19906869 - 19906806
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| |||| ||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||    
T  19906869 agggacaggacaaaaactgaaatttttgtccctcaccaaaccacagcacaactttttgtctcac 19906806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 25860399 - 25860462
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||||||| ||||| | ||||| ||| ||||| |||||||| ||||||||||||||||||    
T  25860399 agggacatgacaaaaactcatatttttgtccctcaccaaaccacatcacaactttttgtctcac 25860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 49748891 - 49748948
Alignment:
Q  175 ggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||| ||||| | ||||| ||| ||||| |||||||||||||||||||||||    
T  49748891 ggacatgacaaaaactgatatttttgtccctcaccaaaccacaacacaactttttgtc 49748948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 1344708 - 1344748
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  1344708 ttttgtccctcaccaaaccacagcacaactttttgtctcac 1344748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21374014 - 21373978
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  21374014 ttttgtccctcaccaaaccacaacacaactttttgtc 21373978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 28675874 - 28675838
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28675874 ttttgtccctcaccaaaccacaacacaactttttgtc 28675838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 29584959 - 29584923
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  29584959 ttttgtccctcaccaaaccacaacacaactttttgtc 29584923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 38213438 - 38213402
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  38213438 ttttgtcactcacgaaaccacaacacaactttttgtc 38213402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 51925209 - 51925245
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  51925209 ttttgtccctcaccaaaccacaacacaactttttgtc 51925245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 10932838 - 10932787
Alignment:
Q  176 gacatgacacaaactaaaattttgtctctcactaaaccacaacacaactttt 227  Q
    ||||||| | |||||||||||||||| |||||||||||||| ||||||||||    
T  10932838 gacatgataaaaactaaaattttgtccctcactaaaccacatcacaactttt 10932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 32303561 - 32303643
Alignment:
Q  150 tgtttgatttataaaactgctttagggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||| |||||||| || ||| ||| |||| ||||| | ||||| ||| ||||| |||||||||||||||||||||||    
T  32303561 tgtttgatttgtaaaactgtttcaggtacaggacaaaaactcatatttttgtccctcaccaaaccacaacacaactttttgtc 32303643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 6386659 - 6386619
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  6386659 ttttgtccctcaccaaaccacaacacaactttttgtctcac 6386619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 37618414 - 37618454
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  37618414 ttttgtccctcaccaaaccacaacacaactttttgtctcac 37618454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 7394813 - 7394876
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||||||| ||||| | ||||| ||| ||||| |||||| ||||||||||||||||||||    
T  7394813 agggacatgacaaaaactcatatttttgtccctcaccaaaccataacacaactttttgtctcac 7394876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 17520700 - 17520642
Alignment:
Q  173 agggacatgacacaaactaaaattttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| | || ||||| | |||||||| ||||| |||||||||||||||||||||||    
T  17520700 agggacagggcaaaaacttatattttgtccctcaccaaaccacaacacaactttttgtc 17520642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 8673077 - 8673113
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  8673077 ttttgtccctcaccaaaccacaacacaactttttgtc 8673113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 10656708 - 10656748
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  10656708 ttttgtccttcacaaaaccacaacacaactttttgtctcac 10656748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 15001549 - 15001513
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  15001549 ttttgtccctcaccaaaccacaacacaactttttgtc 15001513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 29563248 - 29563284
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  29563248 ttttgtccctcaccaaaccacaacacaactttttgtc 29563284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 29672345 - 29672381
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  29672345 ttttgtccctcaccaaaccacaacacaactttttgtc 29672381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 36426265 - 36426309
Alignment:
Q  191 aaaattttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||||||  | |||||||||||||||| |||||||||||||    
T  36426265 aaaattttgtcatttactaaaccacaacacatctttttgtctcac 36426309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 26180184 - 26180270
Alignment:
Q  95 tgtgtttgatctggtaaaaaataaagaatattatatgacaatttcaattatacaatgtttgatttataaaactgctttagggacatga 182  Q
    ||||||||||||  |||||||| ||| | || ||||||||| |||| ||||||||| |||||||| |||||||| ||| |||||||||    
T  26180184 tgtgtttgatctcttaaaaaat-aagtacataatatgacaacttcagttatacaatatttgatttgtaaaactgtttttgggacatga 26180270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 553480 - 553444
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| |||||||||||||||||||||||    
T  553480 ttttgtctctcaccaaaccacaacacaactttttgtc 553444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 41790475 - 41790515
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  41790475 ttttgtccctcaccaaaccacaacacaactttttgtctcac 41790515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 700622 - 700654
Alignment:
Q  203 ctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||| |||||||||||||||||||||||||||    
T  700622 ctcaccaaaccacaacacaactttttgtctcac 700654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 4689711 - 4689747
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  4689711 ttttgtccctcaccaaaccacaacacaactttttgtc 4689747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 5571657 - 5571693
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  5571657 ttttgtccctcaccaaaccacaacacaactttttgtc 5571693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 5673222 - 5673186
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  5673222 ttttgtccctcaccaaaccacaacacaactttttgtc 5673186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 6284311 - 6284347
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  6284311 ttttgtccctcaccaaaccacaacacaactttttgtc 6284347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 7208243 - 7208283
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  7208243 ttttgtccctcaccaaaccacagcacaactttttgtctcac 7208283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 8136920 - 8136884
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  8136920 ttttgtccctcaccaaaccacaacacaactttttgtc 8136884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 32528798 - 32528762
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  32528798 ttttgtccctcaccaaaccacaacacaactttttgtc 32528762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 39918590 - 39918550
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  39918590 ttttgtccctcaccaaaccacagcacaactttttgtctcac 39918550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 40876507 - 40876598
Alignment:
Q  95 tgtgtttgatctggtaaaaaataaagaatattatatgacaatttcaattatacaatgtttgatttataaaactgctttagggacatgacaca 186  Q
    |||||| ||| || |||||||||||||| | |||| |||||||| | || | ||||||||||||| |||||||  |||| ||||||||||||    
T  40876507 tgtgttcgatttgctaaaaaataaagaacaatataagacaattttatttgtccaatgtttgatttgtaaaactattttaaggacatgacaca 40876598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 30326317 - 30326378
Alignment:
Q  174 gggacatgacacaaactaaaattttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||| |||| ||||| | |||||||||||| | |||||||| ||||||||||||||||||    
T  30326317 gggacaggacaaaaactcatattttgtctctcgccaaaccacagcacaactttttgtctcac 30326378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 4641599 - 4641559
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  4641599 ttttgtctctcaccaaaccacagcacaactttttgtctcac 4641559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 38623180 - 38623276
Alignment:
Q  88 ttaagggtgtgtttgatctggtaaaaaataaagaatattatatgacaatttcaattatacaatgtttgatttataaaactgctttagggacatgaca 184  Q
    ||||||||||||||||| || |||||| | ||| | || | || |||| |||| |||| ||||||||||||| |||||||| || ||||||| ||||    
T  38623180 ttaagggtgtgtttgatttgttaaaaattgaaggacatgacataacaacttcagttatccaatgtttgatttgtaaaactgtttcagggacaggaca 38623276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 40832476 - 40832516
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  40832476 ttttgtccctcaccaaaccacaacacaactttttgtctcac 40832516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 44284712 - 44284672
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  44284712 ttttgtccctcactaaaccacagcacaactttttgtctcac 44284672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 83350 - 83315
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgt 230  Q
    |||||||||||||||||||| |||||||||||||||    
T  83350 ttttgtctctcactaaaccataacacaactttttgt 83315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 8112383 - 8112348
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgt 230  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8112383 ttttgtctctcaccaaaccacaacacaactttttgt 8112348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 10399877 - 10399916
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  10399877 ttttgtccttcactaaaccacaacacaactttttgtctca 10399916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 18126995 - 18127034
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  18126995 ttttgtctatcattaaaccacaacacaactttttgtctca 18127034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 25383289 - 25383255
Alignment:
Q  150 tgtttgatttataaaactgctttagggacatgaca 184  Q
    |||||||||||||||||||||||||||||| ||||    
T  25383289 tgtttgatttataaaactgctttagggacaggaca 25383255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 37003829 - 37003911
Alignment:
Q  150 tgtttgatttataaaactgctttagggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||| |||| ||| || ||| |||| ||| ||||| | ||||| ||| ||||| |||||||||||||||||||||||    
T  37003829 tgtttgatttgtaaatctgtttcaggtacataacaaaaactcatatttttgtccctcaccaaaccacaacacaactttttgtc 37003911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 38786528 - 38786576
Alignment:
Q  186 aaactaaaattttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||| ||||||| ||||||||||||||| |||||||| |||||||||||    
T  38786528 aaactgaaatttt-tctctcactaaaccaaaacacaacattttgtctcac 38786576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 7258980 - 7258940
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  7258980 ttttgtccctcaccaaaccacagcacaactttttgtctcac 7258940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 7761580 - 7761620
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  7761580 ttttgtccctcaccaaaccacagcacaactttttgtctcac 7761620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 9732937 - 9732973
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  9732937 ttttgtccctcaccaaaccacaacacaactttttgtc 9732973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 16104357 - 16104317
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  16104357 ttttgtccctcaccaaaccacagcacaactttttgtctcac 16104317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 16177890 - 16177930
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| || || |||||||||||||||||||||||||||    
T  16177890 ttttgtcgcttaccaaaccacaacacaactttttgtctcac 16177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 18685919 - 18685883
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  18685919 ttttgtctctcaccaaaccacagcacaactttttgtc 18685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 37308738 - 37308702
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  37308738 ttttgtccctcaccaaaccacaacacaactttttgtc 37308702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 41366117 - 41366157
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||| ||||||||||||    
T  41366117 ttttgtccctcaccaaaccacaacacaattttttgtctcac 41366157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 42706442 - 42706406
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  42706442 ttttgtccctcaccaaaccacaacacaactttttgtc 42706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 45463117 - 45463153
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  45463117 ttttgtcactcaccaaaccacaacacaactttttgtc 45463153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 8360660 - 8360603
Alignment:
Q  175 ggacatgacacaaactaaaatt-ttgtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||| ||| ||||||| ||||||| |||||||||||| ||||||||||||||    
T  8360660 ggacatgacaaaaaataaaattcttgtctcacactaaaccacatcacaactttttgtc 8360603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 17237163 - 17237123
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  17237163 ttttgtcattcactaaaccacaacacaactttttgtctcac 17237123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 35645581 - 35645501
Alignment:
Q  148 aatgtttgatttataaaactgctttagggacatgacacaaactaaaattttgtctctcactaaaccacaacacaacttttt 228  Q
    |||||||||||| ||||| |  |||| ||||| |||| ||||| || | | ||| ||||||||||||||||||||||||||    
T  35645581 aatgtttgatttgtaaaattattttaaggacaagacaaaaactgaattctcgtccctcactaaaccacaacacaacttttt 35645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 47316706 - 47316746
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  47316706 ttttgtccctcaccaaaccacaacacaactttttgtctcac 47316746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 11822333 - 11822274
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||||| ||||| | ||||| |||  ||||||||||||||||||||||||||||    
T  11822333 agggacatgacaaaaactcatatttttgtccttcactaaaccacaacacaactttttgtc 11822274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 29372764 - 29372818
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaacttt 226  Q
    ||||||| |||| ||||||||||||| |||  |||||||||||||||||||||||    
T  29372764 agggacacgacaaaaactaaaatttttgtccgtcactaaaccacaacacaacttt 29372818  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 1870222 - 1870186
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  1870222 ttttgtccctcaccaaaccacaacacaactttttgtc 1870186  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 11250704 - 11250668
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  11250704 ttttgtccctcaccaaaccacaacacaactttttgtc 11250668  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21784958 - 21784922
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  21784958 ttttgtccctcaccaaaccacaacacaactttttgtc 21784922  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 23349299 - 23349335
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  23349299 ttttgtccctcaccaaaccacaacacaactttttgtc 23349335  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 30849254 - 30849290
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  30849254 ttttgtccctcaccaaaccacaacacaactttttgtc 30849290  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 32873777 - 32873817
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  32873777 ttttgtccttcaccaaaccacaacacaactttttgtctcac 32873817  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 43189227 - 43189283
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaacttttt 228  Q
    |||||||||||| ||||| | ||||| ||| ||||| ||||||||||||||||||||    
T  43189227 agggacatgacaaaaactcatatttttgtccctcaccaaaccacaacacaacttttt 43189283  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 7396151 - 7396211
Alignment:
Q  175 ggacatgacacaaactaaaattttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||| |||| ||||  |||| ||||| ||||||||||||| |||||||||||||||||||    
T  7396151 ggacaggacaaaaacagaaatcttgtccctcactaaaccactacacaactttttgtctcac 7396211  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 10324157 - 10324197
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  10324157 ttttgtccctcaccaaaccacaacacaactttttgtctcac 10324197  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 11279211 - 11279171
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  11279211 ttttgtccctcaccaaaccacaacacaactttttgtctcac 11279171  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 24785161 - 24785105
Alignment:
Q  173 agggacatgacacaaactaaaatt-ttgtctctcactaaaccacaacacaacttttt 228  Q
    |||||||||||| ||||| ||||| ||||| |||||||||||||||||||| |||||    
T  24785161 agggacatgacaaaaactgaaattcttgtcgctcactaaaccacaacacaatttttt 24785105  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 8342636 - 8342675
Alignment:
Q  192 aaattttgtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  8342636 aaattttgtcactcaataaaccacaacacaactttttgtc 8342675  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 18597181 - 18597240
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||||| || || ||||||| ||| ||||| |||||||||||||||||||||||    
T  18597181 agggacatgacaaaatctgaaatttttgtccctcaccaaaccacaacacaactttttgtc 18597240  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 29054462 - 29054399
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtctcac 235  Q
    |||||||||||| |||||| |||||| ||| ||| | |||||||| ||||||||||||||||||    
T  29054462 agggacatgacaaaaactacaatttttgtccctcgccaaaccacagcacaactttttgtctcac 29054399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 4064375 - 4064325
Alignment:
Q  181 gacacaaactaaaattttgtctctcactaaaccacaacacaactttttgtc 231  Q
    |||| ||||||||||||||||||| ||||||| || |||||| ||||||||    
T  4064375 gacaaaaactaaaattttgtctcttactaaactacgacacaaatttttgtc 4064325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 11382168 - 11382107
Alignment:
Q  173 agggacatgacacaaactaaaattttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| |||| ||||| | ||||| | |||||| |||||||||||||||||||||||||||    
T  11382168 agggacaggacaaaaactcatatttt-tgtctcaccaaaccacaacacaactttttgtctcac 11382107  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 29202952 - 29203012
Alignment:
Q  176 gacatgacacaaactaaaat--tttgtctctcactaaaccacaacacaactttttgtctca 234  Q
    ||||||||| |||||||||   ||||||| ||||||| ||||||||||||||||| |||||    
T  29202952 gacatgacaaaaactaaaaaaatttgtctttcactaatccacaacacaactttttctctca 29203012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 166969 - 167005
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  166969 ttttgtccctcaccaaaccacaacacaactttttgtc 167005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 1004472 - 1004508
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  1004472 ttttgtcactcattaaaccacaacacaactttttgtc 1004508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 2122795 - 2122767
Alignment:
Q  206 actaaaccacaacacaactttttgtctca 234  Q
    |||||||||||||||||||||||||||||    
T  2122795 actaaaccacaacacaactttttgtctca 2122767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 3932853 - 3932889
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  3932853 ttttgtctctcaccaaaccacatcacaactttttgtc 3932889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 14808047 - 14808083
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  14808047 ttttgtccctcaccaaaccacaacacaactttttgtc 14808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 31870146 - 31870182
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  31870146 ttttgtccctcaccaaaccacaacacaactttttgtc 31870182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 1633 - 1692
Alignment:
Q  173 agggacatgacacaaactaaaatttt-gtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| |||| ||||| ||||||| ||| ||||| |||||||||||||||||||||||    
T  1633 agggacaagacaaaaactgaaatttttgtccctcaccaaaccacaacacaactttttgtc 1692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 6928 - 6967
Alignment:
Q  192 aaattttgtctctcactaaaccacaacacaactttttgtc 231  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  6928 aaattttgtcactcaataaaccacaacacaactttttgtc 6967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 4592 - 4628
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  4592 ttttgtccctcaccaaaccacaacacaactttttgtc 4628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 15394 - 15430
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  15394 ttttgtccctcaccaaaccacaacacaactttttgtc 15430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 12549 - 12585
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  12549 ttttgtccctcaccaaaccacaacacaactttttgtc 12585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 18067 - 18103
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtc 231  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  18067 ttttgtccctcaccaaaccacaacacaactttttgtc 18103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 15255 - 15215
Alignment:
Q  195 ttttgtctctcactaaaccacaacacaactttttgtctcac 235  Q
    ||||||| | ||| |||||||||||||||||||||||||||    
T  15255 ttttgtcccccaccaaaccacaacacaactttttgtctcac 15215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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