View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5831_low_7 (Length: 477)

Name: NF5831_low_7
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5831_low_7
NF5831_low_7
[»] chr8 (6 HSPs)
chr8 (1-290)||(5830324-5830613)
chr8 (261-292)||(26886067-26886098)
chr8 (261-302)||(17923081-17923122)
chr8 (261-301)||(32555259-32555298)
chr8 (261-297)||(35843148-35843183)
chr8 (269-301)||(44087251-44087283)
[»] chr5 (8 HSPs)
chr5 (372-459)||(36281068-36281154)
chr5 (269-302)||(1488377-1488410)
chr5 (262-301)||(31561360-31561399)
chr5 (259-294)||(36281217-36281252)
chr5 (69-120)||(39290834-39290885)
chr5 (62-102)||(3575149-3575189)
chr5 (269-301)||(24636664-24636696)
chr5 (262-302)||(31939377-31939417)
[»] chr3 (5 HSPs)
chr3 (249-301)||(5293661-5293713)
chr3 (250-302)||(19883081-19883132)
chr3 (262-301)||(54018423-54018461)
chr3 (262-298)||(31272689-31272725)
chr3 (269-301)||(47313388-47313420)
[»] chr2 (9 HSPs)
chr2 (266-301)||(41204517-41204552)
chr2 (62-100)||(5610090-5610128)
chr2 (250-292)||(40874097-40874139)
chr2 (256-290)||(42365187-42365221)
chr2 (268-301)||(21870912-21870945)
chr2 (269-301)||(19976166-19976198)
chr2 (269-301)||(32063604-32063636)
chr2 (261-301)||(41859857-41859896)
chr2 (249-301)||(43860015-43860067)
[»] scaffold0458 (1 HSPs)
scaffold0458 (269-301)||(11168-11200)
[»] chr7 (6 HSPs)
chr7 (269-301)||(38728221-38728253)
chr7 (254-292)||(44770168-44770206)
chr7 (268-301)||(8290486-8290519)
chr7 (269-301)||(20243268-20243300)
chr7 (262-290)||(21928145-21928173)
chr7 (269-301)||(36343552-36343584)
[»] chr4 (5 HSPs)
chr4 (63-103)||(51545589-51545629)
chr4 (69-106)||(17344232-17344269)
chr4 (261-290)||(33024161-33024190)
chr4 (262-302)||(16335586-16335626)
chr4 (262-290)||(36490574-36490602)
[»] scaffold0009 (1 HSPs)
scaffold0009 (262-301)||(189607-189646)
[»] chr1 (9 HSPs)
chr1 (262-301)||(29450998-29451037)
chr1 (69-106)||(12043677-12043714)
chr1 (269-301)||(925443-925475)
chr1 (262-290)||(3248783-3248811)
chr1 (269-301)||(24752664-24752696)
chr1 (250-290)||(28679676-28679716)
chr1 (269-301)||(39452473-39452505)
chr1 (261-301)||(43545867-43545906)
chr1 (269-301)||(52494069-52494101)
[»] chr6 (2 HSPs)
chr6 (262-292)||(16890473-16890503)
chr6 (249-290)||(2726444-2726485)
[»] scaffold0079 (1 HSPs)
scaffold0079 (262-302)||(57234-57274)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 5830613 - 5830324
Alignment:
Q  1 cataactatcgtcttatattctccatgtgtctttgcacacgttctcaattgctcaatgcagtcttatatataagaaaaagttaaatcaacaaaagttaat 100  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830613 cataactaacgtcatatattctccatgtgtctttgcacacgttctcaattgctcaatgcagtcttatatataagaaaaagttaaatcaacaaaagttaat 5830514  T
Q  101 gtatctaacaaaaaatttaaagcaaattgtatatcaattttgttggcgtcactttttcttatatatataaacatgacttgagggagtataagattaatat 200  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830513 gtatctagcaaaaaatttaaagcaaattatatatcaattttgttggcctcactttttcttatatatataaacatgacttgagggagtataagattaatat 5830414  T
Q  201 atgacataaaaagtgagatgactcatatcatgtgagattcatatgagtagtcatcgtaaatttaacttagttggtatggacaatgcataa 290  Q
    ||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||| ||||    
T  5830413 atggcataaaaagtgtgaggactcttatcatgtgagattcatatgagtagtcatcgtgaacttaatttagttggtatgaacaatgtataa 5830324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 26886098 - 26886067
Alignment:
Q  261 tttaacttagttggtatggacaatgcataaaa 292  Q
    ||||||||||||||||||||||||||||||||    
T  26886098 tttaacttagttggtatggacaatgcataaaa 26886067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 17923081 - 17923122
Alignment:
Q  261 tttaacttagttggtatggacaatgcataaaaatatgcaaga 302  Q
    ||||||| |||| ||||||||||||||||||||||| |||||    
T  17923081 tttaactcagtttgtatggacaatgcataaaaatatacaaga 17923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 32555259 - 32555298
Alignment:
Q  261 tttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  32555259 tttagcttagttggtatggacaatgcat-aaaatatgcaag 32555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 35843183 - 35843148
Alignment:
Q  261 tttaacttagttggtatggacaatgcataaaaatatg 297  Q
    |||||||||||||||||| ||||||||||||||||||    
T  35843183 tttaacttagttggtatg-acaatgcataaaaatatg 35843148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 44087251 - 44087283
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||| ||||||||||||||||||||||    
T  44087251 agttggtatgtacaatgcataaaaatatgcaag 44087283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 36281154 - 36281068
Alignment:
Q  372 actttaaagtttgttgtatttaacttttagcctctttnnnnnnntaaaataaatttttatcaaatcttactttaattatatctttatg 459  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||    
T  36281154 actttaaagtttgttgtatttaacttttagcctctttaaaaaaataaaataaa-ttttatcaaatcttactttaattatatctttatg 36281068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 1488377 - 1488410
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaaga 302  Q
    ||||||||||||||||||||||||||||||||||    
T  1488377 agttggtatggacaatgcataaaaatatgcaaga 1488410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 31561399 - 31561360
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  31561399 ttaactcagttggtatggacaatgcataataatatgcaag 31561360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 36281252 - 36281217
Alignment:
Q  259 aatttaacttagttggtatggacaatgcataaaaat 294  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36281252 aatttaactcagttggtatggacaatgcataaaaat 36281217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 39290885 - 39290834
Alignment:
Q  69 tataagaaaaagttaaatcaacaaaagttaatgtatctaacaaaaaatttaa 120  Q
    ||||||| |||||  |||||||||||||||||||||||||  ||||||||||    
T  39290885 tataagagaaagtcgaatcaacaaaagttaatgtatctaattaaaaatttaa 39290834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 3575149 - 3575189
Alignment:
Q  62 tcttatatataagaaaaagttaaatcaacaaaagttaatgt 102  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  3575149 tcttatatataagaaaaagttgagtcaacaaaagttgatgt 3575189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 24636696 - 24636664
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||| ||||||||||||||||||||||||||||    
T  24636696 agttagtatggacaatgcataaaaatatgcaag 24636664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 31939377 - 31939417
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaaga 302  Q
    |||||| |||||||||||| ||||||||||||||| |||||    
T  31939377 ttaactcagttggtatggataatgcataaaaatatacaaga 31939417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 5293713 - 5293661
Alignment:
Q  249 agtcatcgtaaatttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    |||| ||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  5293713 agtcctcgtaaacttaacttagttggtattgacaatgcataataatatgcaag 5293661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 19883081 - 19883132
Alignment:
Q  250 gtcatcgtaaatttaacttagttggtatggacaatgcataaaaatatgcaaga 302  Q
    |||||||| | |||||||||||||||||||| ||||||| |||||||||||||    
T  19883081 gtcatcgtgagtttaacttagttggtatggataatgcat-aaaatatgcaaga 19883132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 54018461 - 54018423
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  54018461 ttaacttagttggtatggacaatgcat-aaaatatgcaag 54018423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 31272689 - 31272725
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgc 298  Q
    |||||| |||||||||||| |||||||||||||||||    
T  31272689 ttaactcagttggtatggataatgcataaaaatatgc 31272725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 47313420 - 47313388
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||| ||||||||||    
T  47313420 agttggtatggacaatgcataataatatgcaag 47313388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 41204552 - 41204517
Alignment:
Q  266 cttagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||||||||||||||||||||||||||||||||    
T  41204552 cttagttggtatggacaatgcataaaaatatgcaag 41204517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 5610128 - 5610090
Alignment:
Q  62 tcttatatataagaaaaagttaaatcaacaaaagttaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  5610128 tcttataaataagaaaaagttatatcaacaaaagttaat 5610090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 40874139 - 40874097
Alignment:
Q  250 gtcatcgtaaatttaacttagttggtatggacaatgcataaaa 292  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||    
T  40874139 gtcatcgtgaatttaactcagttgatatggacaatgcataaaa 40874097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 42365221 - 42365187
Alignment:
Q  256 gtaaatttaacttagttggtatggacaatgcataa 290  Q
    |||||||||| ||||||||||||||||||||||||    
T  42365221 gtaaatttaatttagttggtatggacaatgcataa 42365187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 21870945 - 21870912
Alignment:
Q  268 tagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||||||||||||||||||| ||||||||||    
T  21870945 tagttggtatggacaatgcataataatatgcaag 21870912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 19976166 - 19976198
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||| ||||||||||    
T  19976166 agttggtatggacaatgcataataatatgcaag 19976198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 32063636 - 32063604
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||| ||||||||||||||||||||    
T  32063636 agttggtatggataatgcataaaaatatgcaag 32063604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 41859857 - 41859896
Alignment:
Q  261 tttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  41859857 tttaactcagttggtatggacaatgcat-aaaatatgcaag 41859896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 43860067 - 43860015
Alignment:
Q  249 agtcatcgtaaatttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||||| |  |||||| | ||||||||||| |||||||||||||||||||    
T  43860067 agtcatcgtgagcttaactcaattggtatggacgatgcataaaaatatgcaag 43860015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 11200 - 11168
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||||||||||||||    
T  11200 agttggtatggacaatgcataaaaatatgcaag 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 38728221 - 38728253
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||||||||||||||    
T  38728221 agttggtatggacaatgcataaaaatatgcaag 38728253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 44770206 - 44770168
Alignment:
Q  254 tcgtaaatttaacttagttggtatggacaatgcataaaa 292  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  44770206 tcgtaaacttaactcagttggtatggacaatgcataaaa 44770168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 8290519 - 8290486
Alignment:
Q  268 tagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||||||||||||||||||| ||||||||||    
T  8290519 tagttggtatggacaatgcataataatatgcaag 8290486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 20243268 - 20243300
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||| ||||||||||    
T  20243268 agttggtatggacaatgcataataatatgcaag 20243300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 21928173 - 21928145
Alignment:
Q  262 ttaacttagttggtatggacaatgcataa 290  Q
    |||||||||||||||||||||||||||||    
T  21928173 ttaacttagttggtatggacaatgcataa 21928145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 36343584 - 36343552
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||| ||||||||||    
T  36343584 agttggtatggacaatgcataataatatgcaag 36343552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 51545629 - 51545589
Alignment:
Q  63 cttatatataagaaaaagttaaatcaacaaaagttaatgta 103  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  51545629 cttatatataagataaagttagatcaacaaaagttaatgta 51545589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 17344232 - 17344269
Alignment:
Q  69 tataagaaaaagttaaatcaacaaaagttaatgtatct 106  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  17344232 tataagagaaagttaaatcaacaaaagttgatgtatct 17344269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 33024161 - 33024190
Alignment:
Q  261 tttaacttagttggtatggacaatgcataa 290  Q
    ||||||||||||||||||||||||||||||    
T  33024161 tttaacttagttggtatggacaatgcataa 33024190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 16335626 - 16335586
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaaga 302  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  16335626 ttaactcagttgttatggaaaatgcataaaaatatgcaaga 16335586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 36490574 - 36490602
Alignment:
Q  262 ttaacttagttggtatggacaatgcataa 290  Q
    |||||||||||||||||||||||||||||    
T  36490574 ttaacttagttggtatggacaatgcataa 36490602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 189646 - 189607
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  189646 ttaactcagttggtatggacaatgcataataatatgcaag 189607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 29451037 - 29450998
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  29451037 ttaactcagttggtatggacaatgcataataatatgcaag 29450998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 12043714 - 12043677
Alignment:
Q  69 tataagaaaaagttaaatcaacaaaagttaatgtatct 106  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  12043714 tataagaaaaatttaaatcaacaaaaattaatgtatct 12043677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 925475 - 925443
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||| |||||||||||||||||||||||||||    
T  925475 agttgatatggacaatgcataaaaatatgcaag 925443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 3248783 - 3248811
Alignment:
Q  262 ttaacttagttggtatggacaatgcataa 290  Q
    |||||||||||||||||||||||||||||    
T  3248783 ttaacttagttggtatggacaatgcataa 3248811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 24752696 - 24752664
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||||||||||||||| ||||||||||    
T  24752696 agttggtatggacaatgcataataatatgcaag 24752664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 28679676 - 28679716
Alignment:
Q  250 gtcatcgtaaatttaacttagttggtatggacaatgcataa 290  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  28679676 gtcattgtaaatttaacttagttggtaaagacaatgcataa 28679716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 39452473 - 39452505
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||||||||| ||||||||||||||||||||||    
T  39452473 agttggtatgaacaatgcataaaaatatgcaag 39452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 43545906 - 43545867
Alignment:
Q  261 tttaacttagttggtatggacaatgcataaaaatatgcaag 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  43545906 tttaacttagttggtattgacaatgcat-aaaatatgcaag 43545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 52494069 - 52494101
Alignment:
Q  269 agttggtatggacaatgcataaaaatatgcaag 301  Q
    |||| ||||||||||||||||||||||||||||    
T  52494069 agttagtatggacaatgcataaaaatatgcaag 52494101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 16890503 - 16890473
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaa 292  Q
    |||||||||||||||||||||||||||||||    
T  16890503 ttaacttagttggtatggacaatgcataaaa 16890473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 2726485 - 2726444
Alignment:
Q  249 agtcatcgtaaatttaacttagttggtatggacaatgcataa 290  Q
    |||| ||||||| |||||| ||||||||||||||||||||||    
T  2726485 agtcctcgtaaacttaactcagttggtatggacaatgcataa 2726444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 57234 - 57274
Alignment:
Q  262 ttaacttagttggtatggacaatgcataaaaatatgcaaga 302  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  57234 ttaactcagttgttatggaaaatgcataaaaatatgcaaga 57274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University