View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5831_low_8 (Length: 465)
Name: NF5831_low_8
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5831_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 35019866 - 35019588
Alignment:
| Q |
18 |
aagcatatccactaaaatttccgtacatacgtaagttctacacataaaaaccaagttctactcaccgatagtaaatttagtactatttagtgattacttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35019866 |
aagcatatccactaaaatttccgtacatacgtaagttctacacatacaaaccaagttctactgaccgatagtaaatttagtactatttagtgattacttt |
35019767 |
T |
|
| Q |
118 |
ccttgccaacaggatggaactaactattttatttgtttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttctc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35019766 |
ccttgccaacagaatggaactaactattttatttatttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttct- |
35019668 |
T |
|
| Q |
218 |
atacatagggatatatgcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35019667 |
---catagggatatatgcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact |
35019588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 70 - 300
Target Start/End: Complemental strand, 35029302 - 35029078
Alignment:
| Q |
70 |
aagttctactcaccgatagtaaatttagtactatttagtgattactttccttgccaacaggatggaactaactattttatttgtttttgaataagttagt |
169 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35029302 |
aagttctactcaccgatggtaaatttagtactatttagtgattactttccttgccaacagaatggaactaactattttatttgtttttgaataagttagt |
35029203 |
T |
|
| Q |
170 |
gaaaccaactaggttgcacaatattttgtagtattctctgtctttctcatacatagggatatatgcatcaggtccacatttttcatgatacaccaaatct |
269 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35029202 |
gaaaccaactaggttgcacaatattttgcagtattctctgtctttct----cataggg--atatgcatcaggtccacatttttaatgatacaccaaatct |
35029109 |
T |
|
| Q |
270 |
taaaaatgaaagaacgtaattaactctcact |
300 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |
|
|
| T |
35029108 |
taaaaatgaaataacttaattaactctcact |
35029078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 35019546 - 35019435
Alignment:
| Q |
342 |
ttgtagcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac |
441 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35019546 |
ttgtggcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac |
35019447 |
T |
|
| Q |
442 |
tccatatcttca |
453 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35019446 |
tccatatcttca |
35019435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 35033152 - 35033225
Alignment:
| Q |
380 |
atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca |
453 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35033152 |
atggatgctcctcctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca |
35033225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 35008895 - 35008956
Alignment:
| Q |
396 |
ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatctc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35008895 |
ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc |
35008956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 35037038 - 35036977
Alignment:
| Q |
396 |
ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatctc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35037038 |
ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc |
35036977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 35026156 - 35026216
Alignment:
| Q |
393 |
ctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
35026156 |
ctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttca |
35026216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 34998980 - 34998928
Alignment:
| Q |
394 |
tcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccat |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34998980 |
tcctttgcacatagcaatgtttccatggtttgctatgggacactcaactccat |
34998928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 36288442 - 36288504
Alignment:
| Q |
391 |
ttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca |
453 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
36288442 |
ttcttctttgcacatagcaatgtctccatggtttgcaatgggacacctaattccatatcttca |
36288504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 450
Target Start/End: Complemental strand, 35012482 - 35012412
Alignment:
| Q |
380 |
atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatct |
450 |
Q |
| |
|
|||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
35012482 |
atggatgctcttcctcctatgcatatatcaatgtttccatggtttgctatgggacatttcaccccatatct |
35012412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 30595333 - 30595269
Alignment:
| Q |
392 |
tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatct |
456 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||| ||| |||||||| |||||||| |
|
|
| T |
30595333 |
tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct |
30595269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 30612681 - 30612617
Alignment:
| Q |
392 |
tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatct |
456 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||| ||| |||||||| |||||||| |
|
|
| T |
30612681 |
tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct |
30612617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University