View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5832-Insertion-1 (Length: 682)
Name: NF5832-Insertion-1
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832-Insertion-1 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 9 - 614
Target Start/End: Complemental strand, 30264777 - 30264171
Alignment:
| Q |
9 |
aatagtacgtacttttt-atgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30264777 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30264678 |
T |
|
| Q |
108 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264677 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30264578 |
T |
|
| Q |
208 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264577 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30264478 |
T |
|
| Q |
308 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264477 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctg |
30264378 |
T |
|
| Q |
408 |
atgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264377 |
atgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctc |
30264278 |
T |
|
| Q |
508 |
ccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaaggttcacag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
30264277 |
ccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggttcagag |
30264178 |
T |
|
| Q |
608 |
gttctgc |
614 |
Q |
| |
|
|||||| |
|
|
| T |
30264177 |
tttctgc |
30264171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 9 - 614
Target Start/End: Original strand, 30287411 - 30288017
Alignment:
| Q |
9 |
aatagtacgtactttt-tatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30287411 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30287510 |
T |
|
| Q |
108 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287511 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30287610 |
T |
|
| Q |
208 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287611 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30287710 |
T |
|
| Q |
308 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287711 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctg |
30287810 |
T |
|
| Q |
408 |
atgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287811 |
atgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctc |
30287910 |
T |
|
| Q |
508 |
ccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaaggttcacag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
30287911 |
ccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggttcagag |
30288010 |
T |
|
| Q |
608 |
gttctgc |
614 |
Q |
| |
|
|||||| |
|
|
| T |
30288011 |
tttctgc |
30288017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 103 - 600
Target Start/End: Complemental strand, 30271576 - 30271079
Alignment:
| Q |
103 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
202 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
|
|
| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
203 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
302 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
|
|
| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
303 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
402 |
Q |
| |
|
|||||||||| |||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30271376 |
atccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30271277 |
T |
|
| Q |
403 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
502 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
30271276 |
agctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccata |
30271177 |
T |
|
| Q |
503 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
600 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
30271176 |
ttctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30271079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 103 - 600
Target Start/End: Original strand, 30280613 - 30281110
Alignment:
| Q |
103 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
202 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
203 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
302 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
303 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
402 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30280813 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30280912 |
T |
|
| Q |
403 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
502 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
30280913 |
agctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccata |
30281012 |
T |
|
| Q |
503 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
600 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
30281013 |
ttctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30281110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 103 - 600
Target Start/End: Complemental strand, 30304643 - 30304146
Alignment:
| Q |
103 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
202 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
203 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
302 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
303 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
402 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30304443 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30304344 |
T |
|
| Q |
403 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
502 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30304343 |
agttgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccata |
30304244 |
T |
|
| Q |
503 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
600 |
Q |
| |
|
||| || |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
30304243 |
ttcccctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30304146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 260 - 436
Target Start/End: Complemental strand, 30048723 - 30048547
Alignment:
| Q |
260 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
359 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
360 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30048623 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30048547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 260 - 436
Target Start/End: Complemental strand, 30063064 - 30062888
Alignment:
| Q |
260 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
359 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
360 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30062964 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30062888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 254 - 436
Target Start/End: Complemental strand, 30032483 - 30032301
Alignment:
| Q |
254 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
353 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
354 |
ttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
436 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30032383 |
ttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctttatcttttcct |
30032301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 272 - 436
Target Start/End: Complemental strand, 30228850 - 30228686
Alignment:
| Q |
272 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctc |
371 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatggttactctc |
30228751 |
T |
|
| Q |
372 |
tcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
436 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30228750 |
tcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30228686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 267 - 436
Target Start/End: Original strand, 30220209 - 30220378
Alignment:
| Q |
267 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta |
366 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
30220308 |
T |
|
| Q |
367 |
ctctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30220309 |
ctctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30220378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 329 - 436
Target Start/End: Original strand, 2311381 - 2311488
Alignment:
| Q |
329 |
ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt |
428 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| || | ||||||||||| ||||||||||||| |
|
|
| T |
2311381 |
ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt |
2311480 |
T |
|
| Q |
429 |
cttttcct |
436 |
Q |
| |
|
|||||||| |
|
|
| T |
2311481 |
cttttcct |
2311488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 29483293 - 29483193
Alignment:
| Q |
335 |
ttcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttc |
434 |
Q |
| |
|
|||||| |||| |||||| |||| ||||| ||| ||||||||||| ||||||| | ||||| |||||||||||||||||||| | |||||| |||| |
|
|
| T |
29483293 |
ttcaaatttcaccatgcaattggagatggctacaatctcatgggtgtcattctttcgagccttcaaagagctgatgatccttctctccgtttgtcctttc |
29483194 |
T |
|
| Q |
435 |
c |
435 |
Q |
| |
|
| |
|
|
| T |
29483193 |
c |
29483193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 278 - 423
Target Start/End: Complemental strand, 79679 - 79534
Alignment:
| Q |
278 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg |
377 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgg |
79580 |
T |
|
| Q |
378 |
gtgctcttctttcttgtcttcatagagctgatgatccttctcttcc |
423 |
Q |
| |
|
|||| |||||||| ||| | | ||||||||| | ||||||||||| |
|
|
| T |
79579 |
gtgcacttctttcatgtttagaaagagctgataacccttctcttcc |
79534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 72612 - 72506
Alignment:
| Q |
281 |
tgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtg |
380 |
Q |
| |
|
|||||||| ||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
72612 |
tgggaaattcatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgggag |
72513 |
T |
|
| Q |
381 |
ctcttct |
387 |
Q |
| |
|
||||||| |
|
|
| T |
72512 |
ctcttct |
72506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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