View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832-Insertion-2 (Length: 649)
Name: NF5832-Insertion-2
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 342 - 565
Target Start/End: Complemental strand, 45992843 - 45992620
Alignment:
| Q |
342 |
gaatgtatcacagtatcttgattaagaatggatgaataagaaatgaatatttaccttgaaagaaggtgcgttgaagttgaaattgaaacactagatataa |
441 |
Q |
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| T |
45992843 |
gaatgtatcacagtatcttgattaagaatggatgaattagaaattaatatttaccttgaaagaaggtgcgttgaagttgaaattgaaacactagatataa |
45992744 |
T |
|
| Q |
442 |
agaagagaaagattgtagaaagaaaattagtgatacccattgctatgtttatttattctgaagtaagatgctgagaattcagaaaagaaatctcgcggga |
541 |
Q |
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| T |
45992743 |
agaagagaaagattgtagaaagaagattattgatacccattgctatgtttatttatactgaagtaagatgctgagaattcagaaaagaaatctcgcggga |
45992644 |
T |
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| Q |
542 |
gannnnnnncgcgaatcgttgttc |
565 |
Q |
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| T |
45992643 |
gatttttttcgcgaatcgttgttc |
45992620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 33 - 271
Target Start/End: Complemental strand, 45994667 - 45994430
Alignment:
| Q |
33 |
catgtttaaaggtctgagggcaatcacttgatctactttatcttcatcggtagcattggaagcatcatctaagatttcaacttcctctacctttttctga |
132 |
Q |
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| T |
45994667 |
catgtttaaaggtctgagggcaattacttgatctactttatcttcatcggtagcattggaagcatcatctaagatttcaacttcttctacctttttctga |
45994568 |
T |
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| Q |
133 |
agaagnnnnnnnnnngtactttacttggctttgcagaaaaaggaccattttaacataacagttaatatattagaagtaattatgtagctaccatttcttt |
232 |
Q |
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| T |
45994567 |
agaa-aaaaaaaaatgtactttacttagctttgcagaaaaaagaccattttaacataacagttaatatattagaagtacttaaatagctaccatttcttt |
45994469 |
T |
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| Q |
233 |
ttctttctcctgttgtattacctccttaagggggcgata |
271 |
Q |
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| T |
45994468 |
ttctttctcctgttgtattagctccttaagggggcgata |
45994430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 44936471 - 44936364
Alignment:
| Q |
9 |
attctttgcctgtctaatgtcttccatgtttaaaggtctgagggcaatcacttgatctactttatcttcatcggtagcattggaagcatcatctaagatt |
108 |
Q |
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| T |
44936471 |
attctttgcctctctcatgtcctccatgtttaaaggcctgagggcaatcacttgatcttctttatcttcttcggtagcaatggaagcttcttctaagatt |
44936372 |
T |
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| Q |
109 |
tcaacttc |
116 |
Q |
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|||||||| |
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| T |
44936371 |
tcaacttc |
44936364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 45989850 - 45989743
Alignment:
| Q |
9 |
attctttgcctgtctaatgtcttccatgtttaaaggtctgagggcaatcacttgatctactttatcttcatcggtagcattggaagcatcatctaagatt |
108 |
Q |
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| T |
45989850 |
attctttgcctgtctcatgtcttccatgttcaaaggccggagggaaatcacttgatcttctatatcatctttggcagcattggaagcatcttctaagatt |
45989751 |
T |
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| Q |
109 |
tcaacttc |
116 |
Q |
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|||||||| |
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| T |
45989750 |
tcaacttc |
45989743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 44936265 - 44936214
Alignment:
| Q |
220 |
ctaccatttctttttctttctcctgttgtattacctccttaagggggcgata |
271 |
Q |
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| T |
44936265 |
ctaccatttctttttccttctcctgttgtattagctccttaagggggcgata |
44936214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 44928050 - 44927997
Alignment:
| Q |
12 |
ctttgcctgtctaatgtcttccatgtttaaaggtctgagggcaatcacttgatc |
65 |
Q |
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| T |
44928050 |
ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatc |
44927997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 44927812 - 44927761
Alignment:
| Q |
220 |
ctaccatttctttttctttctcctgttgtattacctccttaagggggcgata |
271 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||||| ||||||||| |
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| T |
44927812 |
ctaccatttctttttccttctcctgttgcattagctccttaatggggcgata |
44927761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 614 - 649
Target Start/End: Complemental strand, 45992622 - 45992587
Alignment:
| Q |
614 |
ttcttatttatttctcactatagatgtctattatac |
649 |
Q |
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| T |
45992622 |
ttcttatttatttctcactatagatgtctattatac |
45992587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 45999207 - 45999178
Alignment:
| Q |
9 |
attctttgcctgtctaatgtcttccatgtt |
38 |
Q |
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| T |
45999207 |
attctttgcctgtctaatgtcttccatgtt |
45999178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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