View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832-Insertion-3 (Length: 563)
Name: NF5832-Insertion-3
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 307703 - 308109
Alignment:
| Q |
9 |
ttagaatatgtatttatttatataaagatacaaattaatactttagtaagagatttccccaccgtttacaactactaaagagaacactaatgcggacttt |
108 |
Q |
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| T |
307703 |
ttagaatatgtatttatttatataaagatacaaattaatactttagtaagagatttccccaccgtttacaactaccaaagagaacactaatgcggacttt |
307802 |
T |
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| Q |
109 |
gattatcagcaaccaatagtaaataagcattcatgaatgatataaactagcagcatgggtgccttatgacaatgacatggaaagtcatagcacatcgtat |
208 |
Q |
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| T |
307803 |
gattatcagcaaccaatagtaaataagcattcatgaatgatataaactagcagcatgggtgccttatgacaatgacatggaaagtcatagcacatcgtat |
307902 |
T |
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| Q |
209 |
gaaaatgaatgatgaattaacttatagttatagttgaagcagatatggctat------nnnnnnntaaaattgagagggcatgagtggcaatgatatcaa |
302 |
Q |
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| T |
307903 |
gaaaatgaatgatgaattaac------ttatagttgaagcagatatggctataaaaaaaaaaaaaaaaaattgagagggcatgagtggcaatgatatcaa |
307996 |
T |
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| Q |
303 |
gaaagacgattgtgaacaaacacatttgaatgtgacttggatttccaccaatttgaagatgatgcaaaccccacaagatatcaaggtcaattctattata |
402 |
Q |
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| T |
307997 |
gaaagacgattgtggacaaacacatttgaatgtgacttggatttccaccaatttgaagatgatgcaaaccccacaagatatcaaggtcaattctattata |
308096 |
T |
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| Q |
403 |
acatctaattatt |
415 |
Q |
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| T |
308097 |
acatctaattatt |
308109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 308143 - 308236
Alignment:
| Q |
454 |
gttaggcttatattcacgggcatctctggctccttcataatataggtaccccatttactcccttttgccctcatcttctcatatctactctttt |
547 |
Q |
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| T |
308143 |
gttaggcttatattcacgggcatctctggctccttcataatataggtaccccatttactcccttttgccctcatcttctcatgtctactctttt |
308236 |
T |
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