View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832-Insertion-4 (Length: 317)
Name: NF5832-Insertion-4
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 1582064 - 1582373
Alignment:
| Q |
9 |
gttttagtattataatacttgcttaatttgctacaagattagtgaattatgttatttctatcttctgtatgattttcgtccatcgttgcagtactatcat |
108 |
Q |
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| T |
1582064 |
gttttagtattataatacttgcttaatttgctacaagattagtgaattatgttatttctatcttctgtatgattttcgtccatcgttgcagtactatcat |
1582163 |
T |
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| Q |
109 |
gctgtttgatttaaatcaatattgtttgcatataacaatctagtaannnnnnn-atgtaaatttgagaataaaccatcaatttagtccataaactgttat |
207 |
Q |
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| T |
1582164 |
gctgtttgatttaaatcaatattgtttgcatataacaatctagtaattttttttatgtaaatttgagaataaaccatcaatttagtccataaactgttat |
1582263 |
T |
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| Q |
208 |
aaacagtccttaaaatatatgaaatcagtcaatttagtttacaaagtactctaacatgtgtcaccgtcacgtgccattgcattagattatgtgattttct |
307 |
Q |
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| T |
1582264 |
aaacagtccttaaaatatatgaaatcagtcaatttagtttacaaagtactctaacatgtgtcactgtcacgtgccattgcattagattatgtgattttct |
1582363 |
T |
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| Q |
308 |
catattatta |
317 |
Q |
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| T |
1582364 |
catattatta |
1582373 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 31811197 - 31811225
Alignment:
| Q |
174 |
gaataaaccatcaatttagtccataaact |
202 |
Q |
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| T |
31811197 |
gaataaaccatcaatttagtccataaact |
31811225 |
T |
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