View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832-Insertion-7 (Length: 855)
Name: NF5832-Insertion-7
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 332 - 844
Target Start/End: Complemental strand, 48698469 - 48697958
Alignment:
| Q |
332 |
tacaattgtattgtcaacattcattcattcattatttatttttggctctaatcaacattcattctttacaacatcacgtgtttgcagccattttagaatt |
431 |
Q |
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| T |
48698469 |
tacaattgtattgtcaacattcattcatt----atttatttttggctctaatcaacattcattctttacaacatcacatgtttgcagccattttagaatt |
48698374 |
T |
|
| Q |
432 |
ttccaaattcgttgtggaacttgctctcctataacataactcctacatgttgtatttttgggtgcaaaacatactag-nnnnnnnatccatatagaattt |
530 |
Q |
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| T |
48698373 |
ttccaaattcgttgtggaacttgctctcctataacataactcctacatgttgtatttttgggtgcaaaacatactagttttttttatccatatagaattt |
48698274 |
T |
|
| Q |
531 |
catataactattaagagaaatagttcatatagtaaataaatgcaataaaatatagattccgattgatgttaacagtactgattcttctcagtaaaagagg |
630 |
Q |
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| T |
48698273 |
catataactattaagagaaaaagttcatatagtaaataaatgcaataaaatatagattccgattgatgttaacagtactgattcttctcagtaaaagagg |
48698174 |
T |
|
| Q |
631 |
tgaaaatgtaaaaattatgtcaaacatatatgtttattatataaaacaatgagtaat---------agcagcaacaactaatttcatatggtaacaannn |
721 |
Q |
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| T |
48698173 |
tgaaaatgt-aaaattatgtcaaacatatatgtttattatat-aaacaatgagtaatagtagtagcagcagcaacaactaatttcatatggtaacaa-ta |
48698077 |
T |
|
| Q |
722 |
nnnnnnnnncattagtgtaatgcaaataaaagtaaaaagaatgggaattttatgagtggttgttggctgattatatacctgtgccccttcacttggacta |
821 |
Q |
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| T |
48698076 |
tatatatatcattagtgtaatgcaaataaaagtaaaaagaatgagaactttatgagtggttgtt-gctgattatatacttgtg-cccttcacctggact- |
48697980 |
T |
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| Q |
822 |
aggaccagaaatgcttaatcact |
844 |
Q |
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||| |||| |||||||||||||| |
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| T |
48697979 |
aggtccag-aatgcttaatcact |
48697958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 48698699 - 48698553
Alignment:
| Q |
9 |
taaagaatatcctaaaaatcaattagccactgttaaatattttttgtttctaaatgtaacagatgaggcaccacttagatttgcttgcaatgaccgtctg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||||||||||| |
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| T |
48698699 |
taaagaatatcctaaaaatcaattagccactgttaaatattttttgtttgtaaatgtaacagatgaggcaccactaaaat----ttgcaatgaccgtctg |
48698604 |
T |
|
| Q |
109 |
ccttaaatgattctatcgtgtaggggtcctatcctaaaatagattgtcctt |
159 |
Q |
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| T |
48698603 |
ccttaaatgattctatcgtgtaggggtcctatcctaaaatagattgtcctt |
48698553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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