View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832_high_2 (Length: 501)
Name: NF5832_high_2
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 77 - 483
Target Start/End: Complemental strand, 308109 - 307703
Alignment:
| Q |
77 |
aataattagatgttataatagaattgaccttgatatcttgtggggtttgcatcatcttcaaattggtggaaatccaagtcacattcaaatgtgtttgttc |
176 |
Q |
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| T |
308109 |
aataattagatgttataatagaattgaccttgatatcttgtggggtttgcatcatcttcaaattggtggaaatccaagtcacattcaaatgtgtttgtcc |
308010 |
T |
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| Q |
177 |
acaatcgtctttcttgatatcattgccactcatgccctctcaattttannnnnnn------atagccatatctgcttcaactataactataagttaattc |
270 |
Q |
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| T |
308009 |
acaatcgtctttcttgatatcattgccactcatgccctctcaattttttttttttttttttatagccatatctgcttcaactataa------gttaattc |
307916 |
T |
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| Q |
271 |
atcattcattttcatacgatgtgctatgactttccatgtcattgtcataaggcacccatgctgctagtttatatcattcatgaatgcttatttactattg |
370 |
Q |
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| T |
307915 |
atcattcattttcatacgatgtgctatgactttccatgtcattgtcataaggcacccatgctgctagtttatatcattcatgaatgcttatttactattg |
307816 |
T |
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| Q |
371 |
gttgctgataatcaaagtccgcattagtgttctctttggtagttgtaaacggtggggaaatctcttactaaagtattaatttgtatctttatataaataa |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
307815 |
gttgctgataatcaaagtccgcattagtgttctctttggtagttgtaaacggtggggaaatctcttactaaagtattaatttgtatctttatataaataa |
307716 |
T |
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| Q |
471 |
atacatattctaa |
483 |
Q |
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| T |
307715 |
atacatattctaa |
307703 |
T |
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