View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832_high_5 (Length: 415)
Name: NF5832_high_5
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 50834903 - 50834495
Alignment:
| Q |
1 |
acaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834903 |
acaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
50834804 |
T |
|
| Q |
101 |
agagaaaagtaaaatgaacaaaattcacgactcaaactgattgttttaaattatccagaatacatttataactctgaaacagaat---gggattgactaa |
197 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
50834803 |
agagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattgggattgactaa |
50834704 |
T |
|
| Q |
198 |
taa--------atagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatgtgc |
289 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50834703 |
taattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatatgc |
50834604 |
T |
|
| Q |
290 |
ccatggaaagacgggattgatgatc-aaagcaaagctcaacattaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctct |
388 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834603 |
ccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctct |
50834504 |
T |
|
| Q |
389 |
tgttcttac |
397 |
Q |
| |
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||||||||| |
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| T |
50834503 |
tgttcttac |
50834495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 50840950 - 50841358
Alignment:
| Q |
1 |
acaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50840950 |
acaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
50841049 |
T |
|
| Q |
101 |
agagaaaagtaaaatgaacaaaattcacgactcaaactgattgttttaaattatccagaatacatttataactctgaaacagaat---gggattgactaa |
197 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
50841050 |
agagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattgggattgactaa |
50841149 |
T |
|
| Q |
198 |
taa--------atagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatgtgc |
289 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50841150 |
taattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatatgc |
50841249 |
T |
|
| Q |
290 |
ccatggaaagacgggattgatgatc-aaagcaaagctcaacattaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctct |
388 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841250 |
ccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctct |
50841349 |
T |
|
| Q |
389 |
tgttcttac |
397 |
Q |
| |
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||||||||| |
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|
| T |
50841350 |
tgttcttac |
50841358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 11729773 - 11729632
Alignment:
| Q |
1 |
acaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729773 |
acaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
11729674 |
T |
|
| Q |
101 |
agagaaaagtaaaatgaacaaaattcacgactcaaactgatt |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11729673 |
agagaaaagtaacatgaacaaaattcacgactcaaactgatt |
11729632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 23740085 - 23739944
Alignment:
| Q |
1 |
acaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740085 |
acaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtgcaagaagtgac |
23739986 |
T |
|
| Q |
101 |
agagaaaagtaaaatgaacaaaattcacgactcaaactgatt |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
23739985 |
agagaaaagtaacatgaacaaaattcacgactcaaactgatt |
23739944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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