View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832_low_11 (Length: 249)
Name: NF5832_low_11
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 22559323 - 22559446
Alignment:
| Q |
117 |
cgacaacactcccactgtcaccgccgccaatgttttctcttgctctcctctcgtctccgccagatctcgtcctcgtcaaatcagttagggttttaacatt |
216 |
Q |
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| T |
22559323 |
cgacagcactcccactgtcaccgccgccaatgttttctcttgctctcctctcgtttccgccagatctcgtcctcgtcaaatcagttagggttttaacatt |
22559422 |
T |
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| Q |
217 |
ttcgttttgttcaatattcttcga |
240 |
Q |
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||||||||||||||| |||||||| |
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| T |
22559423 |
ttcgttttgttcaattttcttcga |
22559446 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22559207 - 22559270
Alignment:
| Q |
1 |
cacactctcagcaacaacttcaaatcgaagaagaaaactacaatgaaatccatcgtcgattcaa |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22559207 |
cacactctcagcaacaacttcaaatcgaagaagaaaactacaatgaaatccatcgtcgattcaa |
22559270 |
T |
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