View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5832_low_14 (Length: 239)

Name: NF5832_low_14
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5832_low_14
NF5832_low_14
[»] chr5 (12 HSPs)
chr5 (1-222)||(15083003-15083225)
chr5 (1-221)||(15429429-15429650)
chr5 (1-195)||(15331258-15331452)
chr5 (14-204)||(15357342-15357533)
chr5 (5-212)||(15347065-15347273)
chr5 (12-211)||(15335696-15335893)
chr5 (32-162)||(16403375-16403505)
chr5 (85-221)||(15421638-15421774)
chr5 (2-142)||(17927726-17927866)
chr5 (1-221)||(16414048-16414269)
chr5 (1-135)||(16396810-16396944)
chr5 (30-162)||(15453299-15453431)
[»] chr3 (1 HSPs)
chr3 (2-221)||(8187156-8187376)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15083225 - 15083003
Alignment:
Q  1 caaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  15083225 caaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatattggacgaagaagatatcgacaat 15083126  T
Q  101 gatgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  15083125 gatgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattacaagtttcaagatgcacgatcttgttcacg 15083026  T
Q  200 atcttgctcaatcaatttcagat 222  Q
    |||||||||||||||||||||||    
T  15083025 atcttgctcaatcaatttcagat 15083003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15429429 - 15429650
Alignment:
Q  1 caaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaat 100  Q
    |||||||| || |||||| |||||||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||  |||    
T  15429429 caaagatgaaagaataagtaagcagttactaattcagctttggatggctaatgactttatttcttccaatgaaatgttggacgaggaagatatcgcgaat 15429528  T
Q  101 gatgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacg 199  Q
    ||||||||||||||| ||||||| ||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||| |    
T  15429529 gatgtgtggaatgaaatatattggagatccttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatg 15429628  T
Q  200 atcttgctcaatcaatttcaga 221  Q
    |||| ||||| |||||||||||    
T  15429629 atctcgctcagtcaatttcaga 15429650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 15331452 - 15331258
Alignment:
Q  1 caaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaat 100  Q
    |||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||  |||| || ||| |||||||||||||||||||||| ||||||    
T  15331452 caaagatgaaagaataagtaagaagtttctaattgagctttggatggctaatggcttggtttcatctaatgaaatgttggacgaggaagatattggcaat 15331353  T
Q  101 gatgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatctgtt 195  Q
    |  ||||||||||||||||| |  ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||    
T  15331352 ggggtgtggaatgaattatacttgagatcatttttccaagatattgagacagatatatttggcaaaattacaagtttcaagatgcatgatctgtt 15331258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 15357533 - 15357342
Alignment:
Q  14 ataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatgatgtgtggaatg 113  Q
    ||||| ||||||||| | ||||||||||||||||||||||| |||||||| |||||| ||||  |||| |   |||||||||||||||| ||||||||||    
T  15357533 ataagtaagcagtttttgattgagctttggatggctaatggatttatttcatccaatgaaatactggaagcacaagatatcggcaatgaggtgtggaatg 15357434  T
Q  114 aattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacgatctt 204  Q
    |||||||||||||||||||||| |||||||   ||||| ||| |||||| |||||| ||  ||||||||| || |||| |||||| ||||||    
T  15357433 aattatattgtagatcatttttccaagataccaagacaaatgaatttggaaaaattgtatctttcaagatgcatgatcttgttcatgatctt 15357342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 15347273 - 15347065
Alignment:
Q  5 gatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatgatg 104  Q
    |||| ||| ||||| || |||||| ||||||||||||||||||||||||| |||||| | ||||||  ||||||||| |  |||||||| || ||||| |    
T  15347273 gatgaaattataagcaaacagtttgtaattgagctttggatggctaatggatttattccatccaatggaatgttggaagcagaagatattggtaatgaag 15347174  T
Q  105 tgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacgatct 203  Q
      ||||||||||||||||||||||||||||||||||||| | |||||||||  |||||  ||||| ||  ||||| ||| || |||| |||||| |||||    
T  15347173 catggaatgaattatattgtagatcattttttcaagatactcagacagatgattttggacaaattgtatatttcacgatgcatgatcttgttcatgatct 15347074  T
Q  204 tgctcaatc 212  Q
    |||||||||    
T  15347073 tgctcaatc 15347065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 15335893 - 15335696
Alignment:
Q  12 taataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatgatgtgtggaa 111  Q
    ||||||| || || |||||||| || || ||||||||||||||||||||||| || ||| ||| |||||| || |  ||||| |||||||| ||||||||    
T  15335893 taataagaaaacactttctaatagaactctggatggctaatggctttatttcttcaaatgaaaagttggaagatggtgatattggcaatgaggtgtggaa 15335794  T
Q  112 tgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacgatcttgctcaa 210  Q
    |||||||||||| ||||||||||||||||||||||||| ||||  |||||| |||| |   |||||||| || || |||| |||||| ||||||||||||    
T  15335793 tgaattatattggagatcattttttcaagatattgagatagatcaatttgggaaaact---agtttcaaaatgcatgatcttgttcatgatcttgctcaa 15335697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 16403505 - 16403375
Alignment:
Q  32 attgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatgatgtgtggaatgaattatattgtagatcat 131  Q
    |||||||||||||| ||||||||||| ||||| |||||| |||||||||| |  |||| | | || ||||| |||||||||||||||||||| |||||||    
T  16403505 attgagctttggattgctaatggcttcatttcatccaatcaaatgttggatgcagaaggtgttggtaatgaggtgtggaatgaattatattggagatcat 16403406  T
Q  132 tttttcaagatattgagacagatgtatttgg 162  Q
    |||| ||||||| ||||||||||| ||||||    
T  16403405 ttttccaagatactgagacagatgaatttgg 16403375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 15421638 - 15421774
Alignment:
Q  85 ggaagatatcggcaatgatgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagata 184  Q
    |||||||||||  ||||| |||||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||||  |||||||||||||||||||     
T  15421638 ggaagatatcgt-aatgaggtgtggaatgaactgtattggagatcattttttcaagattttgagagagatgtatttggtgaaattataagtttcaagatg 15421736  T
Q  185 cacgatc-tgttcacgatcttgctcaatcaatttcaga 221  Q
    ||||||| |||||| ||||| ||||  |||||||||||    
T  15421737 cacgatcttgttcatgatctcgctcggtcaatttcaga 15421774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 17927866 - 17927726
Alignment:
Q  2 aaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatg 101  Q
    ||||||| | ||||||| |||||| |||||||||| |||||| |||| ||||| || |||||||||||| |||  ||||| | ||||||||| ||  |||    
T  17927866 aaagatgaattaataagtaagcagcttctaattgaactttgggtggccaatggattcatttcgtccaatgaaagtttggaagcggaagatattggtgatg 17927767  T
Q  102 atgtgtggaatgaattatattgtagatcattttttcaagat 142  Q
    | |||||||||||||||||||| || |||||||||||||||    
T  17927766 aggtgtggaatgaattatattggagttcattttttcaagat 17927726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16414269 - 16414048
Alignment:
Q  1 caaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaat 100  Q
    |||||||| ||||||||  ||| ||||| | ||||| ||||||||||| ||||| ||| |||| ||||||   |||||  |    |||||||| ||||||    
T  16414269 caaagatgaaataataaacaagaagtttttgattgacctttggatggcaaatggttttctttcatccaatgctatgttacaaacagaagatattggcaat 16414170  T
Q  101 gatgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacg 199  Q
    || ||||||||||| |||||||| ||||||||||||||||||||||||   |||| |||||| ||||||  ||  ||||| || ||||| | ||| || |    
T  16414169 gaggtgtggaatgagttatattggagatcattttttcaagatattgagcatgatggatttggaaaaattcaaaaattcaaaatgcacgaccttgtacatg 16414070  T
Q  200 atcttgctcaatcaatttcaga 221  Q
    ||||||||||||| ||| ||||    
T  16414069 atcttgctcaatccattacaga 16414048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 16396944 - 16396810
Alignment:
Q  1 caaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaat 100  Q
    |||||||| ||| ||||| |||||| || ||||||| |||||||  ||||| ||||| ||||| |||||| |||||||||| |  || || || || ||     
T  16396944 caaagatgaaattataagcaagcagcttttaattgatctttggacagctaacggcttcatttcttccaatcaaatgttggaagcagatgacattggtaac 16396845  T
Q  101 gatgtgtggaatgaattatattgtagatcattttt 135  Q
    || |||||||||||||||||||| || ||||||||    
T  16396844 gaggtgtggaatgaattatattggaggtcattttt 16396810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 15453299 - 15453431
Alignment:
Q  30 taattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatgatgtgtggaatgaattatattgtagatc 129  Q
    ||||||||||||||||   |||||| |||||||| || ||| |||||||||| |  |||||| | ||  |||| ||||| |||||||||||||| |||||    
T  15453299 taattgagctttggatttgtaatggttttatttcttctaatcaaatgttggaagcagaagatgttggtcatgaggtgtgtaatgaattatattggagatc 15453398  T
Q  130 attttttcaagatattgagacagatgtatttgg 162  Q
    | |||| ||| |||  ||||||| || ||||||    
T  15453399 acttttccaacataccgagacaggtgaatttgg 15453431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 8187376 - 8187156
Alignment:
Q  2 aaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaatgttggacgaggaagatatcggcaatg 101  Q
    ||||||| | ||||||  ||||| || |||||||| || |||||||||||||| |||||||| |||||| ||||  | || |  || ||||| |||||||    
T  8187376 aaagatgaattaataaaaaagcaattcctaattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatg 8187277  T
Q  102 atgtgtggaatgaattatattgtagatcattttttcaagatattgagacagatgtatttggcaaaattataagtttcaagatacacgatc-tgttcacga 200  Q
    | || ||||||||||||||||| ||||||||||| |||||||||  |||||||| |||||| |||||||||  ||||||||| || |||| ||| || ||    
T  8187276 aggtatggaatgaattatattggagatcatttttccaagatattatgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatga 8187177  T
Q  201 tcttgctcaatcaatttcaga 221  Q
    |||||||||||| || |||||    
T  8187176 tcttgctcaatctatatcaga 8187156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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