View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5832_low_3 (Length: 492)
Name: NF5832_low_3
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 31097392 - 31097868
Alignment:
| Q |
1 |
atgagatggacatcatcagttccacacaatcaactgatcatgattagtcttgtgtaggtaattgttgatcggttgaattcttgctacctttgatcagtat |
100 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097392 |
atgaggtggacctcattagttccacacaatcaactgatcatgattagtcttgtgtaggtaattgttgatcggttgaattcttgctacctttgatcagtat |
31097491 |
T |
|
| Q |
101 |
atagaactctaaagggataaagattgagaataagtnnnnnnnnctttatcaatttaaaaatatcaaactgattgttaattaaatcttgatataaaaactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097492 |
atagaactctaaagggataaagattgagaataagtaaaaaaaactttatcaatttaaaaatatcaaactgattgttaattaaatcttgatataaaaactg |
31097591 |
T |
|
| Q |
201 |
acttgataaaaatatcattactattagaccagccacctcacattctcagttctcaaatcaagccttgatccacttgccttgctgtctccatgatgtggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097592 |
acttgataaaaatatcattactattaaaccagccacctcacattctcagttctcaaatcaagccttgatccacttgccttgctgtctccatgatgtggat |
31097691 |
T |
|
| Q |
301 |
ttactttgtaaaggcatcaactggagaaagcttaacaacgtaacattctcattatcgctgctatagccaccactacctctaccccaaccaatccgtctcg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31097692 |
ttactttgtaaaggcatcaactggagaaagcttaacaacgtaacattctcattatcgctgctatagccaccactacctctaccccgaccaatccgtctcg |
31097791 |
T |
|
| Q |
401 |
cattctcaatgcttccattacctttaaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097792 |
cattctcaatgcttccattacctttaaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttt |
31097868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University