View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5832_low_7 (Length: 343)
Name: NF5832_low_7
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5832_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 1582379 - 1582064
Alignment:
| Q |
11 |
cacagataataatatgagaaaatcacataatctaatgcaatggcacgtgacggtgacacatgttagagtactttgtaaactaaattgactgatttcatat |
110 |
Q |
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| T |
1582379 |
cacagataataatatgagaaaatcacataatctaatgcaatggcacgtgacagtgacacatgttagagtactttgtaaactaaattgactgatttcatat |
1582280 |
T |
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| Q |
111 |
attttaaggactgtttataacagtttatggactaaattgatggtttattctcaaatttacat-nnnnnnnttactagattgttatatgcaaacaatattg |
209 |
Q |
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| T |
1582279 |
attttaaggactgtttataacagtttatggactaaattgatggtttattctcaaatttacataaaaaaaattactagattgttatatgcaaacaatattg |
1582180 |
T |
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| Q |
210 |
atttaaatcaaacagcatgatagtactgcaacgatggacgaaaatcatacagaagatagaaataacataattcactaatcttgtagcaaattaagcaagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582179 |
atttaaatcaaacagcatgatagtactgcaacgatggacgaaaatcatacagaagatagaaataacataattcactaatcttgtagcaaattaagcaagt |
1582080 |
T |
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| Q |
310 |
attataatactaaaac |
325 |
Q |
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| T |
1582079 |
attataatactaaaac |
1582064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 31811225 - 31811197
Alignment:
| Q |
132 |
agtttatggactaaattgatggtttattc |
160 |
Q |
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| T |
31811225 |
agtttatggactaaattgatggtttattc |
31811197 |
T |
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