View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-1 (Length: 922)
Name: NF5834-Insertion-1
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 265 - 922
Target Start/End: Complemental strand, 43369934 - 43369271
Alignment:
| Q |
265 |
cacagacatatttttctaaatttaagttcgtctaaatataaatacagaaaaatgttactactaatctactatctgcaacgtttaataaatactactaccc |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43369934 |
cacagacatatttttctaaatttaagttcgtctaaatataaatacagaaaaatgttactactaatctactatctgcaacgtt-aataaatactactaccc |
43369836 |
T |
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| Q |
365 |
atttctttatcatccttgattaatataatgggatcattgtcttttgtgtgtaagtatggaagnnnnnnnnntgctaaaactatcttagaatttgagtgaa |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
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| T |
43369835 |
atttctttatcatccttgattaatataatgggatcattgtcttttgtgtgtaagtatggaa--aaaagaaatgcttaaactatcttagaatttggatgaa |
43369738 |
T |
|
| Q |
465 |
gtctaactcaatcgtacaacattgacttacaaggtgaggagataagtctagccaccacctataaacacatttttcaagatgtatgtatgcatatcatgag |
564 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43369737 |
gtctaactcaatcgtacaaaattgacttataaggtgaggagataagactagccaccacccataaacacatttttcaagatgtatgtatgcatatcatgag |
43369638 |
T |
|
| Q |
565 |
agattttttaacatactccccacaaattatgtggacacctcgagcgtgacaga-------taacccaacgtattttagataggctcaaataatatcttag |
657 |
Q |
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| T |
43369637 |
agattttttaacatactccccacaaattatgtggacacctcgagcgtgacagacaacagataacccaacagattttagataggctcaaataataccttag |
43369538 |
T |
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| Q |
658 |
aaagtttgagttttgagtttggtctaactcatcctagtatcctacaaaattgaaaagtaaagtgaggaccactcatgcaatatgccacttctcaacaaac |
757 |
Q |
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| T |
43369537 |
aaagtttgagttttgagtttggtctaactcatcctagtatcctacaaaattgaaaagtaaagtgaggaccactcatgcaatatgccacttctcaacaaac |
43369438 |
T |
|
| Q |
758 |
tggatcccaccaaatatgccttggctttagatatagtggaactttcaatacaaaatttgtgtgtgc-aaatattgaagtaaagggaccattaggaatgtg |
856 |
Q |
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| T |
43369437 |
tggatcccaccaaatatgccttggctttagatatagtggaactttcaatacaaaatttgtgtgtgcaaaatattgaagtaaaaggaccattaggaatgtg |
43369338 |
T |
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| Q |
857 |
ccaagtatacgccactacaaagtaagcactcac-atcatggataaaacca-aaaaatcacctatctct |
922 |
Q |
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| T |
43369337 |
ccaagtatatgcctctacaaagtaagcactcacaatcat-gataaaaacagaaaaatcacctatctct |
43369271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 43370191 - 43369974
Alignment:
| Q |
8 |
aaaaatgtgcaacaacaccaattttcttctccttcagcacattgactagttcaccaacttttagctcatcggggaacaagtattttgcctacaagaaagc |
107 |
Q |
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| T |
43370191 |
aaaaatgtgcaacaacaccaattttcttctccttcagcacattgactagttcaccaacttttaactcatcagggaacaagtattttgcctacaggaaagc |
43370092 |
T |
|
| Q |
108 |
tagacagaaattagaagtttaatactttcaggttcagattccatgaaattatgagatttcttgtcatgttcatgacccattccattcatcaagatgtgaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43370091 |
tagacagaaattagaagtttaatactttcaggttcagattccatgaaattatgagatttcttgtcatgttcatgatccattccattcatcaagatgtgaa |
43369992 |
T |
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| Q |
208 |
gtaaactttgttttgaag |
225 |
Q |
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| T |
43369991 |
gtaaactttgttttgaag |
43369974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 40605423 - 40605284
Alignment:
| Q |
50 |
tgactagttcaccaacttttagctcatcggggaacaagtattttgcctacaagaaagctagacagaaattagaagtttaatactttcaggttcagattcc |
149 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
40605423 |
tgactagttcaccaacttttagctcattagggaacaagtattttgcctacacgaaagctagacaaaacttagaagtttaatactttcaggtccagattca |
40605324 |
T |
|
| Q |
150 |
atgaaattatgagatttcttgtcatgttcatgacccattc |
189 |
Q |
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|||||||| | ||||||| |||||||||||| |||||| |
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| T |
40605323 |
atgaaattgaggcatttcttctcatgttcatgatccattc |
40605284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 702 - 920
Target Start/End: Complemental strand, 40604820 - 40604606
Alignment:
| Q |
702 |
caaaattgaaaagtaaagtgaggaccactcatgcaatatgccacttctcaacaaactgga-tcccaccaaatatgccttggctttagatatagtggaact |
800 |
Q |
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||||||| || |||||||||||||||| | |||||| | ||||||||||||||| || | | |||| ||||| |||||||||||||| ||| |||| |
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| T |
40604820 |
caaaattaaatagtaaagtgaggacca----tccaatatacaacttctcaacaaactagaatactgccaagtatgc-ttggctttagatattgtgaaact |
40604726 |
T |
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| Q |
801 |
ttcaatacaaaatttgtgtgtgcaaa-tattgaagtaaagggaccattaggaatgtgccaagtatacgccactacaaagtaagcactcaca-tcatggat |
898 |
Q |
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| T |
40604725 |
ttcaatactaa--ttgtgtgtacaaaatatttaagtaaaaggaccattgggaatgtgccaagtatatgcctctacaaagtaagcactcacagtcat-gat |
40604629 |
T |
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| Q |
899 |
aaaacca-aaaaatcacctatct |
920 |
Q |
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| T |
40604628 |
aaaaacagaaaaatcacctatct |
40604606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 40605104 - 40605034
Alignment:
| Q |
317 |
tgttactactaatctactatctgcaacgtttaataaatactactacccatttctttatcatccttgattaatat |
390 |
Q |
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| T |
40605104 |
tgttactactaatttactatctacatc-tttaataaatactactacc-atttctttatcatcctt-attaatat |
40605034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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