View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-11 (Length: 278)
Name: NF5834-Insertion-11
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-11 |
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| [»] scaffold0022 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 160388 - 160659
Alignment:
| Q |
9 |
ataatacgttgaaa-gaaggatgaaaatgtatgtttcatgtgtatttatatttaaaataagattcgattgttgggtgtttt-ttatgcaggcaactaaga |
106 |
Q |
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| T |
160388 |
ataatacgttgaaaagaaggatgaaaatgcatgtttcatgtgtatttatatttaaaataagattcaattgttgggtttttttttatgcaggcaactaaga |
160487 |
T |
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| Q |
107 |
aactgcgatcaattggtattcgcagcaagattgttggtgtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatca |
206 |
Q |
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| T |
160488 |
aactgtgatcaattcgtattcgtagcaagattgttggtgtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatca |
160587 |
T |
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| Q |
207 |
agtaaaaccattgaccatattagtgtacttaattcgattcttaatgtcgtaaaagctggcaaatagtatgtc |
278 |
Q |
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| T |
160588 |
agtaaaaccattgaccatattggtgtacttaattcgattcttgatgtcgtaaaagctggcaaatagtatgtc |
160659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 39635806 - 39635559
Alignment:
| Q |
20 |
aaagaaggatgaaaatgtatgtttcatgtgtatttatatttaaaataagattcgattgttgggtgtttttta-tgcaggcaactaagaaactgcgatcaa |
118 |
Q |
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| T |
39635806 |
aaagagggatgaaaatgcacgttccatgtgcatttatatttataatgagattcgcttgttggattttttttaatgcaggcaaccaagaaactgcgatcga |
39635707 |
T |
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| Q |
119 |
ttggtattcgcagcaagattgttggtgtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatcaagtaaaaccatt |
218 |
Q |
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| T |
39635706 |
tgggtatcggtagcatgattgttggtgtgtcatcgtgtactgaagcagaaaaacaagaatttatggaagcggggattaatgattatcaagtgaaaccatt |
39635607 |
T |
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| Q |
219 |
gaccatattagtgtacttaattcgattcttaatgtcgtaaaagctggcaa |
268 |
Q |
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| T |
39635606 |
gacc--attggtgtgcttaattccattcttgatgctgtaaaagctagcaa |
39635559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 23348421 - 23348377
Alignment:
| Q |
234 |
cttaattcgattcttaatgtcgtaaaagctggcaaatagtatgtc |
278 |
Q |
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| T |
23348421 |
cttaattcgattcttgatgtcgtaaaagttggcaagtagcatgtc |
23348377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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