View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5834-Insertion-13 (Length: 89)
Name: NF5834-Insertion-13
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-13 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 81; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 43553984 - 43554064
Alignment:
| Q |
9 |
gtttgtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctc |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553984 |
gtttgtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctc |
43554064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 43549984 - 43550063
Alignment:
| Q |
10 |
tttgtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctc |
89 |
Q |
| |
|
|||||||||| || |||| |||||||||||| ||||| ||||| |||||||||||||| |||| ||||| ||| ||||| |
|
|
| T |
43549984 |
tttgtaccataggcaactctcaccaagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctc |
43550063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University