View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-2 (Length: 912)
Name: NF5834-Insertion-2
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-2 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 859; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 9 - 912
Target Start/End: Original strand, 47476463 - 47477366
Alignment:
| Q |
9 |
atttgatcaatgctattgcataattggcatgtcttaatagtaattctatggcaagcaagagaaacacactttcaattcaactactaaaatgctataccat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476463 |
atttgatcaatgctattgcataattggcatgtcttaatagtaattctatggcaagcaagagaaacacactttcaattcaactactaaaatgctataccat |
47476562 |
T |
|
| Q |
109 |
gaagctcggcacatcttcgataactcctttgccagcnnnnnnncctttaccaagtggactatatggtacaattccaataccaagctctctatatcaacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476563 |
gaagctcggcacatcttcgataactcctttgccagcaaaaaaacctttaccaagtggactatatggtacaattccaataccaagctctctatatcaacaa |
47476662 |
T |
|
| Q |
209 |
aagcttgaaataagtaaaatctcattaacacaaacatgcaattcaatacagcaaagagcaatcggttccactgaataactcgtaattagtgaaagttgtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476663 |
aagcttgaaataagtaaaatctcattaacacaaacatgcaattcaatacagcaaagagcaatcggttccactgaataactcgtaattagtgaaagttgtt |
47476762 |
T |
|
| Q |
309 |
cgaattattatttaatgaacaaacaatcatgagtgttgtaatcttatcatgtgaacttggagaggaactcaaactaacctgcagagaggaactatctcgt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476763 |
cgaattattatttaatgaacaaacaatcatgagtgttgtaatcttatcatgtgaacttggagaggaactcaaactaacctgcagagaggaactatctcgt |
47476862 |
T |
|
| Q |
409 |
tctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatag |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47476863 |
tctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgataggatgaacagcatgtgctctccttattgtatcggggctggcttcagatag |
47476962 |
T |
|
| Q |
509 |
tccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaa |
608 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476963 |
tccaatatatttaacttttccctcttccaccagtttcttaagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaa |
47477062 |
T |
|
| Q |
609 |
taatcttcaaatttgaattgtcaataactcaaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataat |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477063 |
taatcttcaaatttgaattgtcaataactcaaccctacaagaccagtttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataat |
47477162 |
T |
|
| Q |
709 |
ctaaccatatcaacatgtatatgtaacgtgttgccgtgtactatgctcaaatcaaatactagttttacataggaagaaatatccttaactgtatcctcaa |
808 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477163 |
ctaaccatatcaacatgtatatgtaacttgttgccgtgtactatgctcaaatcaaatactagttttacataggaagaaatatccttaactgtatcctcaa |
47477262 |
T |
|
| Q |
809 |
taggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaacgcacatactccgg |
908 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477263 |
taggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacattgagacgtttcaagctagcttcgcagcttgaacgcacatactccgg |
47477362 |
T |
|
| Q |
909 |
tgaa |
912 |
Q |
| |
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|||| |
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|
| T |
47477363 |
tgaa |
47477366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 360 - 718
Target Start/End: Original strand, 47473516 - 47473874
Alignment:
| Q |
360 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcgttctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgatag |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||| ||||| | |
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| T |
47473516 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgg |
47473615 |
T |
|
| Q |
460 |
gatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctac |
559 |
Q |
| |
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|||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473616 |
gatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctac |
47473715 |
T |
|
| Q |
560 |
ctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagcttat |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
47473716 |
ctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctagaaaaccagcttat |
47473815 |
T |
|
| Q |
660 |
aaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatat |
718 |
Q |
| |
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|||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
47473816 |
caaggtatgggagtctcccatttataatttgggactctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 361 - 612
Target Start/End: Original strand, 47486232 - 47486483
Alignment:
| Q |
361 |
gaacttggagaggaactcaaactaacctgcagagaggaactatctcgttctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgatagg |
460 |
Q |
| |
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||||||||| ||||||||||||||||| ||| || ||||||||||| | ||||||||| |||||||| ||||||||||| ||||||| ||||||||| || |
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| T |
47486232 |
gaacttggacaggaactcaaactaaccggcatagtggaactatctcatcctcaatgtcacgagtccaaagagaccactccatttgtacagctgtgatggg |
47486331 |
T |
|
| Q |
461 |
atgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacc |
560 |
Q |
| |
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||||| || ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||| ||| |||||||||||||| |
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| T |
47486332 |
atgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatacttcacttttccttcttccaccaacttcataagttcacctacc |
47486431 |
T |
|
| Q |
561 |
tataacacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
612 |
Q |
| |
|
| ||| | || |||||||||||||| ||||||||| |||||| || ||||| |
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|
| T |
47486432 |
tgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 778 - 884
Target Start/End: Original strand, 47473898 - 47474004
Alignment:
| Q |
778 |
taggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
877 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473898 |
taggaagaaatatccttaactgtatcctcaatagacacagaagtatcaattctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
47473997 |
T |
|
| Q |
878 |
tagcttc |
884 |
Q |
| |
|
||||||| |
|
|
| T |
47473998 |
tagcttc |
47474004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 799 - 912
Target Start/End: Original strand, 47486544 - 47486657
Alignment:
| Q |
799 |
gtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaacgca |
898 |
Q |
| |
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|||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
47486544 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcgagacgtttcaagctagcttcgcagcatgaacgca |
47486643 |
T |
|
| Q |
899 |
catactccggtgaa |
912 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
47486644 |
cataatccggtgaa |
47486657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 47473367 - 47473460
Alignment:
| Q |
157 |
accaagtggactatatggtacaattccaataccaagctctctatatcaacaaaagcttgaaataagtaaaatctca-ttaacacaaacatgcaa |
249 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| || || || |||||||||||| |||| |
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| T |
47473367 |
accaagaggactatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
47473460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 47486081 - 47486147
Alignment:
| Q |
157 |
accaagtggactatatggtacaattccaataccaagctctctatatcaacaaaagcttgaaataagt |
223 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
47486081 |
accaagaggactatatgttacaattccaataccaagctctctgtatcaacaaaagctttaaataagt |
47486147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 24802566 - 24802612
Alignment:
| Q |
9 |
atttgatcaatgctattgcataattggcatgtcttaatagtaattct |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
24802566 |
atttgatcaatgctattgcataattggcatgtcttaatagtaattct |
24802612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 550
Target Start/End: Original strand, 47469234 - 47469374
Alignment:
| Q |
410 |
ctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagt |
509 |
Q |
| |
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|||||| || |||||||| |||||||| || ||||| | ||| || || ||||||||| ||||||| || || |||||||| | || || ||||||| | |
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| T |
47469234 |
ctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagcatgtgcccttctgattgtatcagtactagcctcagataat |
47469333 |
T |
|
| Q |
510 |
ccaatatacttaacttttccctcttccaccagtttcttaag |
550 |
Q |
| |
|
|| || ||||||| ||||||||||| |||| |||||||| |
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| T |
47469334 |
cctatgtacttaatctttccctcttcaaccaacttcttaag |
47469374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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