View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-3 (Length: 900)
Name: NF5834-Insertion-3
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 801; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 8 - 884
Target Start/End: Complemental strand, 56469435 - 56468556
Alignment:
| Q |
8 |
aatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctggtccactgtttacattctctggt |
107 |
Q |
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| T |
56469435 |
aatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctggtccactgtttacattctctggt |
56469336 |
T |
|
| Q |
108 |
attgaaaaagtggggaatattgtgcacactttaaaggtgacgcgacataatgggtttcctgtgattgatgagcctccattcttagaagcaccagagttat |
207 |
Q |
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| T |
56469335 |
attgaaaaagtggggaatattgtgcacactttaaaggtgacgcgacataatgggtttcctgtgattgatgagcctccattcttagaagctccagagttat |
56469236 |
T |
|
| Q |
208 |
gtgggttggttttgaggtctcatttgcttgtaattcttaaacataaggcatttacgacgaggccaaacgagaggtccttgattatgaacaagctgagggc |
307 |
Q |
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| T |
56469235 |
gtgggttggttttgaggtctcatttgcttgtaattcttaaacataaggcatttacgacgaggccaaacgagaggtccttgattatgaacaagctgagggc |
56469136 |
T |
|
| Q |
308 |
acatgactttggaaagccaggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatgttgatatgcatcatatt |
407 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56469135 |
acatgactttggaaagccgggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatgttgatatgcatcatatt |
56469036 |
T |
|
| Q |
408 |
acaaacaagccatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggcatttgttggtggtgccaa |
507 |
Q |
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| T |
56469035 |
accaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggcatttgttggtggtgccaa |
56468936 |
T |
|
| Q |
508 |
agacaaccggagtaagaaacaatatactattacaatcttgaataaacatatccatgtatttaagtatacattggctgactttgcaatcattaattacaat |
607 |
Q |
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| T |
56468935 |
agacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgcatttaagtatacattggctgactttgcaatcattaattacaat |
56468836 |
T |
|
| Q |
608 |
tatccttgtttgttgggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagagacctccaattgtgggaatcttgacaaggca |
707 |
Q |
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| T |
56468835 |
tatccttgtatgtt-ggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagagacctccaattgtggggatcttgacaaggca |
56468737 |
T |
|
| Q |
708 |
cgacttcatgtccgagcatatattgggactatacccccactgcaactcccgcaagtaagcagtaactttggggactcactatcaaccaaccacatactca |
807 |
Q |
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| T |
56468736 |
cgacttcatgtccgagcatatattgggactatacccccactgcaactcccgcaagtaagcagtgactttggggactcaccatcaaccaaccacatactca |
56468637 |
T |
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| Q |
808 |
tctatagtc-tataatac-aagtac-aaaaacatgttctatctctacagtact-aattatctttactagaaagaaccacct |
884 |
Q |
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| T |
56468636 |
tctatagtcttataatacaaagtacaaaaaacatgttctatctctacagtactaaattatctttactagaaagaaccacct |
56468556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 155132 - 155341
Alignment:
| Q |
21 |
ccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctggtccactgtttacattctctggtattgaaaaagtgg |
120 |
Q |
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|||||| |||||| |||||||| || ||||||||| |||||||||| || |||||||||||||||||||||||| | || | ||| || |||||||||| |
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| T |
155132 |
ccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagtgg |
155231 |
T |
|
| Q |
121 |
ggaatattgtgcacactttaaaggtgacgcgacataatgggtttcctgtgattgatgagcctccattcttagaagcaccagagttatgtgggttggtttt |
220 |
Q |
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||||||| ||||| |||| || ||||| |||| | || ||||| || ||||||||||||| || || || || ||||| ||||||||||| || |
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| T |
155232 |
ggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagcctcctttgacggatgctcccgagttgtgtgggttggtgtt |
155331 |
T |
|
| Q |
221 |
gaggtctcat |
230 |
Q |
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|||||||||| |
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| T |
155332 |
gaggtctcat |
155341 |
T |
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Back To:
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