View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5834-Insertion-4 (Length: 889)

Name: NF5834-Insertion-4
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5834-Insertion-4
NF5834-Insertion-4
[»] chr3 (8 HSPs)
chr3 (200-627)||(33095925-33096345)
chr3 (627-869)||(33096398-33096648)
chr3 (8-79)||(33095728-33095804)
chr3 (108-178)||(33095833-33095908)
chr3 (33-79)||(33094755-33094801)
chr3 (284-338)||(40878226-40878280)
chr3 (267-327)||(54923500-54923560)
chr3 (284-338)||(51053649-51053703)
[»] chr5 (3 HSPs)
chr5 (267-338)||(22792153-22792224)
chr5 (267-338)||(26526527-26526598)
chr5 (289-338)||(13542847-13542895)
[»] chr4 (4 HSPs)
chr4 (255-338)||(13849357-13849441)
chr4 (267-338)||(22988034-22988105)
chr4 (267-338)||(22717112-22717183)
chr4 (289-338)||(27031857-27031906)
[»] chr1 (5 HSPs)
chr1 (255-338)||(7204551-7204635)
chr1 (267-322)||(236584-236639)
chr1 (267-322)||(11064322-11064377)
chr1 (284-335)||(40685560-40685611)
chr1 (277-335)||(29511132-29511190)
[»] chr8 (7 HSPs)
chr8 (262-338)||(3728369-3728444)
chr8 (267-322)||(11098133-11098187)
chr8 (284-338)||(4312164-4312218)
chr8 (269-323)||(31291235-31291289)
chr8 (284-338)||(36442337-36442391)
chr8 (284-338)||(43149421-43149474)
chr8 (277-338)||(37817400-37817461)
[»] chr7 (4 HSPs)
chr7 (251-338)||(24333338-24333426)
chr7 (267-338)||(6328217-6328288)
chr7 (33-79)||(15320149-15320195)
chr7 (267-324)||(35289860-35289917)
[»] chr2 (2 HSPs)
chr2 (267-338)||(39417457-39417527)
chr2 (301-338)||(22999123-22999160)
[»] scaffold0027 (1 HSPs)
scaffold0027 (255-335)||(19359-19440)
[»] chr6 (1 HSPs)
chr6 (284-337)||(31242034-31242087)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-160; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 200 - 627
Target Start/End: Original strand, 33095925 - 33096345
Alignment:
Q  200 tattgtggcttctgatatatgttttcttgttattagagaagagnnnnnnnngtcacataagtccaga-tcaactgacaaaaattacgaatttgttaggtc 298  Q
    ||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||  | ||||||| ||||||| ||||| |||||||| |    
T  33095925 tattgtggcttctaatatatgttttcttgttattagagaagagctttttt-gtcacataagtcctaactcaactggcaaaaatgacgaaattgttaggcc 33096023  T
Q  299 gaacgtcatgactggggttcgaactccgacacctccacttnnnnnnnnnnnnnnnnagtttacgatgacttatgttactcaagtggtagtaagtaaggta 398  Q
    ||||||||||| |||||||| |||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
T  33096024 gaacgtcatgattggggttcaaactccgacacctccactttgtgtgtgtg------agtttacgatgacttatgttactcaagtggtagtaagtaaggta 33096117  T
Q  399 agacactattcaaggaagaaaacatacctatgttctccgaaagtttgttggagctatagatttcttcttctcgttatagatgtttacactctgaaccatt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33096118 agacactattcaaggaagaaaacatacctatgttctccgaaagtttgttggagctatagatttcttcttctcgttatagaagtttacactctgaaccatt 33096217  T
Q  499 ttgatttgcatatttttctgtggctcgggagatagtatacgcatcgaatgaattttaatttaaaatgaatacgggtgatggaattgtgtttgtaatgttt 598  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33096218 ttgatttgcatatttttctgtggctcgggacatagtatacgcatcgaatgaattttaatttaaaatgaatac-ggtgatggaattgtgtttgtaatgttt 33096316  T
Q  599 gcatatatcgatttacaaacccacttttt 627  Q
    |||||||||||||||||||||||||||||    
T  33096317 gcatatatcgatttacaaacccacttttt 33096345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 627 - 869
Target Start/End: Original strand, 33096398 - 33096648
Alignment:
Q  627 tatatgtggttcaatgcttaatttcttatagaatgaccaagagtccaagacatttttcattctataacagaacttgtggaacatatcagatgaaaagttg 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33096398 tatatgtggttcaatgcttaatttcttatagaatgaccaagagtccaagacatttttcattctataacagaacttgtggaacatatcagatgaaaagttg 33096497  T
Q  727 aaatttgttcat--------ttttatatccaaatatactcaatttcttgctgcagaagttaacaggtcagagaatggttttcatcaccattctttacaag 818  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33096498 aaatttgttcaaaagtaccattttatatccaaatatactcaatttcttgctgcagaagttaacaggtcagagaattgttttcatcaccattctttacaag 33096597  T
Q  819 taaatatgcttttatatgaagtactatggttgctaaactttttatatgatt 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33096598 taaatatgcttttatatgaagtactatggttgctaaactttttatatgatt 33096648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 33095728 - 33095804
Alignment:
Q  8 aagtactatgtttaaatagatataa-----gcttctcattttagactctttataacttgtgttcataaattgcttta 79  Q
    |||||||||||||||||| |||| |     ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33095728 aagtactatgtttaaataaatattaattttgcttctcattttagactctttataaattgtgttcataaattgcttta 33095804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 33095833 - 33095908
Alignment:
Q  108 gtcgtgtcttcgtcctat-----ttacattagcggtgtcacttgttcgagtttgtggttcatagattatattgtat 178  Q
    ||||||||||||||||||     |||||||||||||||  |||||||||||||||| ||||||||||||| |||||    
T  33095833 gtcgtgtcttcgtcctatgttttttacattagcggtgtttcttgttcgagtttgtgcttcatagattatactgtat 33095908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 33094801 - 33094755
Alignment:
Q  33 gcttctcattttagactctttataacttgtgttcataaattgcttta 79  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||||    
T  33094801 gcttctcattttagactctttataaaatgtgttcataaattgattta 33094755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 40878280 - 40878226
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||||||||    
T  40878280 cgaaattgttaggtcgaacgtcatgattgaggttcgaaccccgatacctccactt 40878226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 54923500 - 54923560
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccga 327  Q
    |||||||  ||||||  |||| ||||||||||| |||||||||| ||||||||||||||||    
T  54923500 tcaactggtaaaaatgtcgaaattgttaggtcggacgtcatgaccggggttcgaactccga 54923560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 51053649 - 51053703
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| |||||||||||||||||||||  ||||||||||| |||||| || |||||    
T  51053649 cgaaattgttaggtcgaacgtcatgatcggggttcgaaccccgacaacttcactt 51053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 22792224 - 22792153
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||| |||||||  |||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  22792224 tcaactggcaaaaatgccgaaattgttaggtcggacgtcttgacaggggttcgaaccccgacacctccactt 22792153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 26526527 - 26526598
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||| |||||||  |||| |||||||| ||||||||||||| | |||||||||||||  ||||||||||    
T  26526527 tcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactt 26526598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 13542895 - 13542847
Alignment:
Q  289 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||||| | |||||||||| ||| |||||||||||||||||||||||    
T  13542895 ttgttaggttggacgtcatgaccggg-ttcgaactccgacacctccactt 13542847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 338
Target Start/End: Original strand, 13849357 - 13849441
Alignment:
Q  255 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||||| || |||||||||||||||  |||| ||||||||||  ||||| |||  ||||||||||| |||||||||||||||    
T  13849357 cataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactt 13849441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 22988105 - 22988034
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||| |||||||||  |||| ||||||||||||||||||||||| | |||||||| |||| ||||| ||||    
T  22988105 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgactagagttcgaaccccgatacctctactt 22988034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 22717112 - 22717183
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||| |||||||||  |||| ||||||||||||||||||||| | | |||||||| |||| ||||| ||||    
T  22717112 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgattagagttcgaaccccgatacctctactt 22717183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 27031906 - 27031857
Alignment:
Q  289 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| |||||| |||||||||| | ||||||||||||||||||| |||||    
T  27031906 ttgtcaggtcgtacgtcatgaccgtggttcgaactccgacaccttcactt 27031857  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 7204635 - 7204551
Alignment:
Q  255 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||||| || ||||||| |||||||  |||| |||||||| ||||| ||||||| ||||||||||| |||| ||||||||||    
T  7204635 cataagtcctagctcaactggcaaaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctccactt 7204551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 236584 - 236639
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 322  Q
    |||||||||||||||  |||| |||||||| || |||||||||| |||||||||||    
T  236584 tcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaac 236639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 11064377 - 11064322
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 322  Q
    |||||||| ||||||  ||||||| ||| |||||||| ||||||||||||||||||    
T  11064377 tcaactgataaaaatgtcgaatttattaagtcgaacgccatgactggggttcgaac 11064322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 40685560 - 40685611
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 335  Q
    |||| ||||||||||| | |||||||| |||||||||||||||| |||||||    
T  40685560 cgaaattgttaggtcggatgtcatgaccggggttcgaactccgatacctcca 40685611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 29511132 - 29511190
Alignment:
Q  277 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 335  Q
    ||||| ||||| |||||||| |||| |||||||| ||||||||||| |||| |||||||    
T  29511132 aaaatgacgaaattgttaggccgaatgtcatgaccggggttcgaaccccgatacctcca 29511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 3728444 - 3728369
Alignment:
Q  262 ccagatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| |||||||||||||  | |||| ||||||||||| | ||||||| |||||||||||| |||| ||||||||||    
T  3728444 ccagctcaactgacaaaatat-cgaaattgttaggtcggatgtcatgattggggttcgaaccccgatacctccactt 3728369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 11098187 - 11098133
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 322  Q
    |||||||||||||  | |||| ||||||||||||| ||||||||||||||||||||    
T  11098187 tcaactgacaaaatat-cgaaattgttaggtcgaatgtcatgactggggttcgaac 11098133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 4312164 - 4312218
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| ||||||||||| | | ||||||||||||||||||||||  ||||||||||    
T  4312164 cgaaattgttaggtcggatgccatgactggggttcgaactccggtacctccactt 4312218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 31291235 - 31291289
Alignment:
Q  269 aactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaact 323  Q
    |||||||||||||  |||| |||||||| ||||||||||||  ||||||||||||    
T  31291235 aactgacaaaaatgccgaaattgttaggccgaacgtcatgatcggggttcgaact 31291289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 36442337 - 36442391
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||  ||||||||||    
T  36442337 cgaaattgttaggtcggatgtcatgattggggttcgaactccggtacctccactt 36442391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 43149474 - 43149421
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||| ||||||||||| ||||||| |||  |||||||||||||||||||||||||    
T  43149474 cgaaattgttaggtcggacgtcat-actaaggttcgaactccgacacctccactt 43149421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 37817400 - 37817461
Alignment:
Q  277 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||| ||||| ||||||||||| | | |||||| ||||||||||| |||| ||||||||||    
T  37817400 aaaatgacgaaattgttaggtcggatgccatgaccggggttcgaaccccgatacctccactt 37817461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 24333338 - 24333426
Alignment:
Q  251 gtcacataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||||||||| || |||||| ||||||||  |||| |||||||| ||| ||||||||  ||||||||||||||   ||||||||||    
T  24333338 gtcacataagtcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcatgatcggggttcgaactccagtacctccactt 24333426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 6328288 - 6328217
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    ||||||| |||||||  | || ||||||||| | ||||||||||| |||||||||| |||| ||||||||||    
T  6328288 tcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactt 6328217  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 15320149 - 15320195
Alignment:
Q  33 gcttctcattttagactctttataacttgtgttcataaattgcttta 79  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||||    
T  15320149 gcttctcattttagattctttataaagtgtgctcataaattgcttta 15320195  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 35289860 - 35289917
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactc 324  Q
    |||||||||||||||   ||| ||||||||||  ||||||||| ||||||||||||||    
T  35289860 tcaactgacaaaaatgctgaaattgttaggtcagacgtcatgattggggttcgaactc 35289917  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 39417457 - 39417527
Alignment:
Q  267 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||||||||||||||  |||| |||||||| || | |||||||| |||||||||||||||| | ||||||||    
T  39417457 tcaactgacaaaaataccgaaattgttaggccggatgtcatgac-ggggttcgaactccgatatctccactt 39417527  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 22999123 - 22999160
Alignment:
Q  301 acgtcatgactggggttcgaactccgacacctccactt 338  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  22999123 acgtcatgaccggggttcgaaccccgacacctccactt 22999160  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 19440 - 19359
Alignment:
Q  255 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 335  Q
    ||||||||| || ||||||| |||||||   ||| |||||||| || ||||||||| |||||||||||| |||| |||||||    
T  19440 cataagtcctagttcaactggcaaaaatgttgaaattgttaggccggacgtcatgattggggttcgaaccccgatacctcca 19359  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 31242087 - 31242034
Alignment:
Q  284 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccact 337  Q
    |||| |||||||| || |||||||||| ||||||||||  ||||||||||||||    
T  31242087 cgaaattgttaggccggacgtcatgaccggggttcgaatcccgacacctccact 31242034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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