View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5834-Insertion-5 (Length: 759)

Name: NF5834-Insertion-5
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5834-Insertion-5
NF5834-Insertion-5
[»] chr8 (6 HSPs)
chr8 (13-492)||(9335255-9335751)
chr8 (526-631)||(9336150-9336255)
chr8 (544-613)||(8209157-8209226)
chr8 (566-613)||(9937755-9937802)
chr8 (643-698)||(9336587-9336642)
chr8 (489-519)||(9336026-9336056)
[»] chr1 (2 HSPs)
chr1 (549-613)||(42364910-42364974)
chr1 (273-343)||(42364073-42364143)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 9335255 - 9335751
Alignment:
Q  13 gggtgaaaaacatgactagtagatgtgaaggtattggtgtgtaaaatatggttttaaattgcggttacggtcactgcgagtctactacaacacgcattgc 112  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9335255 gggtgaaaaacatgactagtagatgtaaaggtattgatgtgtaaactatggttttaaattgcggttacggtcactgtgagtctactacgacacgcattgc 9335354  T
Q  113 -----------------cataaaatatggatcatttgtatattggggcaatgaaagaaataaagactaattgaattcaaaagtttcaaaacctcgtaaat 195  Q
                     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9335355 aagattagaaatgtagccataaaatatggatcatttgtatattggggcaatgaaagaaaaaaagactaattgaattcaaaagtttcataacctcgtaaat 9335454  T
Q  196 atgcaatatgcaacatttttgtgtgctctagcataaacggggctctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttc 295  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335455 atgcaatatgcaacatttttgtgtgttctagcataaacggggctctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttc 9335554  T
Q  296 acaaactatagattttgaacaatattaggaaataaatcaaatgaaccatatgatttaaatatgcaaatgatccagtcagtagcggtcactagaggccaat 395  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  9335555 acaaactatagattttgaacaatattagaaaataaatcaaatgaaccatatgatttaaatatgcaaatgatccattcagtagcggtcaccagaggccaat 9335654  T
Q  396 atgaaatacaatgtacgggtttttgcaaaaacctgccacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa 492  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335655 atgaaatacaatgtacaggtttttgcaaaaacctgctacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa 9335751  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 526 - 631
Target Start/End: Original strand, 9336150 - 9336255
Alignment:
Q  526 aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336150 aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca 9336249  T
Q  626 acattc 631  Q
    ||||||    
T  9336250 acattc 9336255  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 613
Target Start/End: Original strand, 8209157 - 8209226
Alignment:
Q  544 aaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 613  Q
    ||||||| |||||||| | || ||||||||||||||  |||||||||||||||| |||||||||||||||    
T  8209157 aaattatgatcacctcgcagcgtcagcatctgcagcatgcaagtaagcaatcaatgcatcaagtgccttc 8209226  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 613
Target Start/End: Original strand, 9937755 - 9937802
Alignment:
Q  566 tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 613  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  9937755 tcagcatctgcatctcgcaagtaagcaatcaacgcatcgagtgccttc 9937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 698
Target Start/End: Original strand, 9336587 - 9336642
Alignment:
Q  643 agtctttttgaaaaattgacctacaaaattcaaaattcaaactccacccaaatcac 698  Q
    ||||||||||| ||| |||||||| | ||||||| ||| |||||||||||||||||    
T  9336587 agtctttttgagaaaatgacctaccagattcaaagttctaactccacccaaatcac 9336642  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 519
Target Start/End: Original strand, 9336026 - 9336056
Alignment:
Q  489 tcaaattcactcaaataaaaaatgttaaata 519  Q
    |||||||||||||||||||||||||||||||    
T  9336026 tcaaattcactcaaataaaaaatgttaaata 9336056  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 42364910 - 42364974
Alignment:
Q  549 attatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 613  Q
    |||||||||| |  || |||||||||||||||||||||||||||||||| |||||||||||||||    
T  42364910 attatcacctgctagcgtcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttc 42364974  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 42364073 - 42364143
Alignment:
Q  273 aattcctaaactcacgtcagttcacaaactatagattttgaacaatattaggaaataaatcaaatgaacca 343  Q
    ||||||||||||| | |||||| | | ||| |||||||||||||| ||||  |||||||||||||| ||||    
T  42364073 aattcctaaactcgcatcagtttaaacactctagattttgaacaaaattacaaaataaatcaaatgcacca 42364143  T

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