View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-7 (Length: 680)
Name: NF5834-Insertion-7
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 38299789 - 38299383
Alignment:
| Q |
9 |
ctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaa |
108 |
Q |
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| T |
38299789 |
ctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaa |
38299690 |
T |
|
| Q |
109 |
tatcttgacataaccactccatgatgttcttcattgagtcgtactcgcaatgacgaaaggaataatcagatgaaaggatcatggatgcacaagtttttac |
208 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299689 |
tatcttgacttaaccattccatgatgttcttcattgagtcgtactcgcaatgacgaaaggaataatcagatgaaaggatcatggatgcacaagtttttac |
38299590 |
T |
|
| Q |
209 |
taaccgtgatatcttttgctccattgtctcgttatcagagtccagtaaatctaccgcgcaatcggattccatattttcttgtgacattgcttcaatgacc |
308 |
Q |
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| T |
38299589 |
taaccgtgattccttttgctccattgtctcgtcatcagagtccagtaaatctacctcgcaatcggattccatattttcttgtgacattgcttcaatgacc |
38299490 |
T |
|
| Q |
309 |
tagattaatacatttcagcattaaaatcacaggttattgcatnnnnnnngaaagaaacttaaataacgaaagagttaccgtgatgcagaggacgcggacg |
408 |
Q |
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| T |
38299489 |
tagattaatacatttcagcattaaaatcacaggttattgcataaaaaaagaaagaaacttaaataacgaaagagttaccgtgatgcagaggacgcggacg |
38299390 |
T |
|
| Q |
409 |
gtgtgac |
415 |
Q |
| |
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||||||| |
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| T |
38299389 |
gtgtgac |
38299383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 475 - 602
Target Start/End: Complemental strand, 38299323 - 38299196
Alignment:
| Q |
475 |
cagtgagaaatgagttcttcccgggcttactatttatattccccccaaattgatgtacgatccgaaaccctaaacgggtaccctcgggtcagggttaaac |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299323 |
cagtgagaaatgagttcttcccgggcttactatttatattccccccaaattgatgtacgatccgaaaccctaaacgggtaccctcgggtcagggttaaac |
38299224 |
T |
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| Q |
575 |
gggttagccgtttgattttatgaaaacc |
602 |
Q |
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| T |
38299223 |
gggttagccgtttgattttatgaaaacc |
38299196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 38316201 - 38316160
Alignment:
| Q |
274 |
attccatattttcttgtgacattgcttcaatgacctagatta |
315 |
Q |
| |
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| T |
38316201 |
attccatattttcttgtgacgttgcttcgacgacctagatta |
38316160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 477 - 595
Target Start/End: Original strand, 4583236 - 4583351
Alignment:
| Q |
477 |
gtgagaaatgagttcttcccgggcttactatttatattccccccaaattgatgtacgatccgaaaccctaaacgggtaccctcgggtcagggttaaacgg |
576 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||| || ||||||||||| |||||||||| |
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| T |
4583236 |
gtgagaaatgagttcttcccaggcttactatttatatt-cccccaaattgatgtatgatctgaaaccctaaac-cgtgccctcgggtca-ggttaaacgg |
4583332 |
T |
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| Q |
577 |
gttagccgtttgattttat |
595 |
Q |
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| T |
4583333 |
gttagccgtttaattttat |
4583351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 4582999 - 4583057
Alignment:
| Q |
272 |
ggattccatattttcttgtgacattgcttcaatgacctagattaatacatttcagcatt |
330 |
Q |
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| T |
4582999 |
ggattccatattttcttgtgacattgcttcaatgacctatattaatacatttcagcatt |
4583057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 4583081 - 4583155
Alignment:
| Q |
328 |
attaaaatcacaggttattgcatnnnnnnngaaagaaacttaaataacgaaagagttaccgtgatgcagaggacg |
402 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
4583081 |
attaaaatcacaggttattgcattcaaaaagacagaaacttaaataaggaaagagttaccgtgacgcagaggacg |
4583155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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