View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-8 (Length: 680)
Name: NF5834-Insertion-8
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 9 - 677
Target Start/End: Original strand, 42452548 - 42453216
Alignment:
| Q |
9 |
caaggaacattggcaaggtgcaagaggttagggacatgtgtatttcctgtgaagaaggcacaaacaccattacaaaatccggatcgtcttgtaaccatgg |
108 |
Q |
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| T |
42452548 |
caaggaacattggcaaggtgcaagaggttagggacatgtgtatttcctgtgaagaaggcacaaacaccattacaaaatccggatcgtcttgtaaccatgg |
42452647 |
T |
|
| Q |
109 |
atgttatacagaatgaaagattttttgtcggtaagcttagtatgagggtcactttggacggtgggtatcatatgtttgatgacgatccacggtacagcac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42452648 |
atgttatacagaatgaaagattttttgtcggtaagcttagtatgagggtcactttggacggcgggtatcatatgtttgatgacgatccacggtacagcac |
42452747 |
T |
|
| Q |
209 |
tgatgtgaatccaacagacaatggggtctggagaccaaacattggagtttttgagatggggatattgaatgctacaggtcttccagagatgaaacctcaa |
308 |
Q |
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| T |
42452748 |
tgatgtgaatccaacagacaatggggtctggagaccaaacattggagtttttgagatggggatattgaatgctacaggtcttccagagatgaaacctcaa |
42452847 |
T |
|
| Q |
309 |
ggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatact |
408 |
Q |
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| T |
42452848 |
ggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatact |
42452947 |
T |
|
| Q |
409 |
cttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctggagcaaacgatacaag |
508 |
Q |
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| T |
42452948 |
cttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctggagcaaacgatacaag |
42453047 |
T |
|
| Q |
509 |
gatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaaccttctgggctgaagaag |
608 |
Q |
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| T |
42453048 |
gatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaaccttctgggctgaagaag |
42453147 |
T |
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| Q |
609 |
atgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtacaaaaagtacaca |
677 |
Q |
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| T |
42453148 |
atgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtataaaaagtacaca |
42453216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 27253755 - 27253643
Alignment:
| Q |
315 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
414 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| |||||||||| |||| ||||||||||||||| ||||| |
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| T |
27253755 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttggg |
27253656 |
T |
|
| Q |
415 |
aggtctatgatcc |
427 |
Q |
| |
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| || |||||||| |
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| T |
27253655 |
aagtttatgatcc |
27253643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 21197913 - 21197801
Alignment:
| Q |
315 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
414 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| ||| |||||| |||| ||||||||||||||| ||||| |
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| T |
21197913 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatattctttcaccaaggtggaatgagcaatatacttggg |
21197814 |
T |
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| Q |
415 |
aggtctatgatcc |
427 |
Q |
| |
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| || |||||||| |
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| T |
21197813 |
aagtttatgatcc |
21197801 |
T |
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