View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834-Insertion-9 (Length: 550)
Name: NF5834-Insertion-9
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 34541243 - 34541092
Alignment:
| Q |
395 |
gtgcctaaactaaacaaagtgtagctgtaatccaaagaagaagaagaacataagcgtaactgttaagcaagatttattttaggaattttgccatttatct |
494 |
Q |
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| T |
34541243 |
gtgcctaaactaaacaaagtgtagctgtaatccaaagaagaagaaaaacataagcgtaactgttaagcaagatttgttttaggaattttgccatttatct |
34541144 |
T |
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| Q |
495 |
gtgtttatatatttgacagccgtagccatttctgcttaaacaatatttctat |
546 |
Q |
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| T |
34541143 |
gtgcttatatatttgacagccgtatccatttctgcttaaacaatatttctat |
34541092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 34541627 - 34541456
Alignment:
| Q |
9 |
aaaatagggaaagtcatattagatgacagtacacaattatgggtacattttgcnnnnnnnaaggaaaagattatgagtacacaattatttgattctttgt |
108 |
Q |
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| T |
34541627 |
aaaatagggaaagtcatattagatgacagtacacaattatgggtacatttttctttttttaaggaaaagattatgggtacacaattatttgattctttgt |
34541528 |
T |
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| Q |
109 |
caaaaaatttaatgannnnnnnnnnnnnntttataacatgtttacataaaatttcagtttatttttattagctctt |
184 |
Q |
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| T |
34541527 |
caaaaaatttaatga----atatatatagtttataacatgtttacattaaatttcagtttatttttattagctctt |
34541456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 34541408 - 34541308
Alignment:
| Q |
232 |
tgagtttatttttggttcaatgttc--attaaacttttatagatataaacatatgcatacattttatgaattttataggtgttttgtgtacgattcttaa |
329 |
Q |
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| T |
34541408 |
tgagtttatttttggttcaatgttctcattaaacttttttagatataaacatatgcatacattttatgaattttataggtgttttgtgtacgattcttaa |
34541309 |
T |
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| Q |
330 |
c |
330 |
Q |
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| T |
34541308 |
c |
34541308 |
T |
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