View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_high_2 (Length: 561)
Name: NF5834_high_2
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Complemental strand, 47476992 - 47476463
Alignment:
| Q |
17 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacagctttacaaatag |
116 |
Q |
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| T |
47476992 |
gtggaagagggaaaagttaaatatattggactatctgaagccagccccgatacaataaggagagcacatgctgttcatcctatcacagctttacaaatag |
47476893 |
T |
|
| Q |
117 |
agtggcctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttcacatgataagattacaacactc |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476892 |
agtggtctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttcacatgataagattacaacactc |
47476793 |
T |
|
| Q |
217 |
atgattgtttgttcattaaataataattcgaacaactttcactaattacgagttattcagtggaaccgattgctctttgctgtattgaattgcatgtttg |
316 |
Q |
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| T |
47476792 |
atgattgtttgttcattaaataataattcgaacaactttcactaattacgagttattcagtggaaccgattgctctttgctgtattgaattgcatgtttg |
47476693 |
T |
|
| Q |
317 |
tgttaatgagattttacttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggtaaaggnnnnnnngctggc |
416 |
Q |
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| T |
47476692 |
tgttaatgagattttacttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggtaaaggtttttttgctggc |
47476593 |
T |
|
| Q |
417 |
aaaggagttatcgaagatgtgccgagcttcatggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgccatagaattactattaagac |
516 |
Q |
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| T |
47476592 |
aaaggagttatcgaagatgtgccgagcttcatggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgccatagaattactattaagac |
47476493 |
T |
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| Q |
517 |
atgccaattatgcaatagcattgatcaaat |
546 |
Q |
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| T |
47476492 |
atgccaattatgcaatagcattgatcaaat |
47476463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 47473694 - 47473516
Alignment:
| Q |
17 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacagctttacaaatag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||| ||||||||| |
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| T |
47473694 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccctgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatag |
47473595 |
T |
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| Q |
117 |
agtggcctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttca |
195 |
Q |
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| T |
47473594 |
agtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttca |
47473516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 47486409 - 47486232
Alignment:
| Q |
17 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacagctttacaaatag |
116 |
Q |
| |
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|||||||| |||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||| || ||||||| ||||||||| ||||||| | |
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| T |
47486409 |
gtggaagaaggaaaagtgaagtatatagggctatctgaagctagcccagatacaataaggagagcgcacaccattcatcccatcacagctgtacaaatgg |
47486310 |
T |
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| Q |
117 |
agtggcctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttc |
194 |
Q |
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| T |
47486309 |
agtggtctctttggactcgtgacattgaggatgagatagttccactatgccggttagtttgagttcctgtccaagttc |
47486232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 47473460 - 47473367
Alignment:
| Q |
306 |
ttgcatgtttgtgttaa-tgagattttacttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggt |
398 |
Q |
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|||| |||||||||||| || || || ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47473460 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtattggaattgtaccatatagtcctcttggt |
47473367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 47486147 - 47486081
Alignment:
| Q |
332 |
acttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggt |
398 |
Q |
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| T |
47486147 |
acttatttaaagcttttgttgatacagagagcttggtattggaattgtaacatatagtcctcttggt |
47486081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 500 - 546
Target Start/End: Complemental strand, 24802612 - 24802566
Alignment:
| Q |
500 |
agaattactattaagacatgccaattatgcaatagcattgatcaaat |
546 |
Q |
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| T |
24802612 |
agaattactattaagacatgccaattatgcaatagcattgatcaaat |
24802566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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