View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_high_21 (Length: 240)
Name: NF5834_high_21
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_high_21 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 33185965 - 33185869
Alignment:
| Q |
22 |
tggtgcataacttgaaagggatgagccaacccacatgggccatggctaccataaatagtgcaaacacactactattggttttcccacaaacccaacttgc |
121 |
Q |
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| T |
33185965 |
tggtgcataacttgaaagggatgagccaacccacatgg-------ctaccatatatagtgcaaccacactactactggttttcccacaaacccaacttgc |
33185873 |
T |
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Target: scaffold0049 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 9419 - 9496
Alignment:
| Q |
142 |
aacaccaacaaataatcgtgaagactttgaaatagtagctgatttaatatccttaaattgatcaataaacctacaatg |
219 |
Q |
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| T |
9419 |
aacaacaactaataatcatgaagactttgaaatagtagttgatttaatatccttaaattgattaataagcctacaatg |
9496 |
T |
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