View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5834_high_4 (Length: 493)

Name: NF5834_high_4
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5834_high_4
NF5834_high_4
[»] chr7 (11 HSPs)
chr7 (6-493)||(21238768-21239255)
chr7 (387-435)||(10893871-10893919)
chr7 (393-437)||(650526-650570)
chr7 (393-437)||(43160491-43160535)
chr7 (395-438)||(18750882-18750925)
chr7 (387-437)||(37775989-37776039)
chr7 (393-438)||(23720467-23720511)
chr7 (392-435)||(10893354-10893397)
chr7 (387-433)||(44172892-44172938)
chr7 (387-416)||(12667970-12667999)
chr7 (387-435)||(31837760-31837808)
[»] chr8 (6 HSPs)
chr8 (386-449)||(32691738-32691801)
chr8 (393-436)||(31681838-31681881)
chr8 (379-424)||(33684878-33684923)
chr8 (393-441)||(8917544-8917592)
chr8 (397-436)||(24758532-24758571)
chr8 (393-433)||(16994051-16994091)
[»] chr4 (18 HSPs)
chr4 (397-438)||(10164469-10164510)
chr4 (393-438)||(45615423-45615468)
chr4 (396-441)||(8457928-8457973)
chr4 (393-438)||(9988707-9988752)
chr4 (393-437)||(683059-683103)
chr4 (387-435)||(28890768-28890816)
chr4 (398-438)||(39439221-39439261)
chr4 (403-438)||(10517999-10518034)
chr4 (393-436)||(25400849-25400892)
chr4 (387-421)||(12651057-12651091)
chr4 (387-433)||(20119956-20120002)
chr4 (387-433)||(43093527-43093573)
chr4 (399-436)||(50216696-50216733)
chr4 (393-433)||(19262932-19262972)
chr4 (397-429)||(29388378-29388410)
chr4 (397-433)||(34093961-34093997)
chr4 (402-438)||(41989570-41989606)
chr4 (393-441)||(46981470-46981518)
[»] chr3 (11 HSPs)
chr3 (393-441)||(1502577-1502625)
chr3 (387-441)||(19323450-19323504)
chr3 (402-449)||(32166200-32166247)
chr3 (387-437)||(1916761-1916811)
chr3 (387-437)||(13290677-13290727)
chr3 (395-433)||(30367629-30367667)
chr3 (393-430)||(4946212-4946249)
chr3 (354-411)||(13635607-13635664)
chr3 (392-433)||(19730216-19730257)
chr3 (392-433)||(19750806-19750847)
chr3 (397-437)||(45382750-45382790)
[»] chr6 (9 HSPs)
chr6 (387-433)||(6284663-6284709)
chr6 (393-439)||(29449686-29449732)
chr6 (400-441)||(10522958-10522999)
chr6 (393-437)||(10335384-10335428)
chr6 (393-436)||(34057962-34058005)
chr6 (387-449)||(30537495-30537557)
chr6 (387-437)||(30600555-30600605)
chr6 (388-436)||(3151385-3151433)
chr6 (393-433)||(10157995-10158035)
[»] chr5 (8 HSPs)
chr5 (396-434)||(645342-645380)
chr5 (387-433)||(27253296-27253342)
chr5 (402-440)||(41755327-41755365)
chr5 (393-438)||(7512205-7512250)
chr5 (392-432)||(10358115-10358155)
chr5 (389-433)||(29365017-29365061)
chr5 (393-433)||(35129970-35130010)
chr5 (392-436)||(36611467-36611511)
[»] chr2 (5 HSPs)
chr2 (387-437)||(41514326-41514376)
chr2 (397-441)||(32843716-32843760)
chr2 (393-432)||(6626481-6626520)
chr2 (387-433)||(16630806-16630852)
chr2 (393-433)||(18622426-18622466)
[»] chr1 (13 HSPs)
chr1 (387-449)||(13709181-13709243)
chr1 (393-433)||(26462653-26462693)
chr1 (393-441)||(31667428-31667476)
chr1 (376-431)||(15792980-15793035)
chr1 (387-438)||(18556028-18556079)
chr1 (387-433)||(21057794-21057840)
chr1 (354-436)||(23605089-23605171)
chr1 (397-446)||(17166823-17166872)
chr1 (389-433)||(8203832-8203876)
chr1 (393-449)||(29230060-29230116)
chr1 (400-436)||(41500721-41500757)
chr1 (400-436)||(41510899-41510935)
chr1 (393-433)||(43609826-43609866)
[»] scaffold0019 (1 HSPs)
scaffold0019 (392-429)||(66196-66233)
[»] scaffold0050 (1 HSPs)
scaffold0050 (393-433)||(59136-59176)


Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 6 - 493
Target Start/End: Complemental strand, 21239255 - 21238768
Alignment:
Q  6 aacttcaccaagagaaaaccaaatattctaaaaacaatcacgttattaacaataaaaccagatttaattcaccatttacatttgggatagtaaattttct 105  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21239255 aacttcaccaagagaaaaccaaatattctaaaaacaatcaagttattaacaataaaaccagatttaattcacaatttacatttgggatagtaaattttct 21239156  T
Q  106 gaaacaaccaaatgttttctttcttcctcggatttcattctatatagctataaaaagaaacttcccctcaattttccattttatcaacaaataattttta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21239155 gaaacaaccaaatgttttctttcttcctcggatttcattctatatagctataaaaagaaacttcccctcaattttctattttatcaacaaataattttta 21239056  T
Q  206 ctaccagaattttaaatgttgctcttgaagttaataagtatcagagcagctacatcgaatacaacttatttagccaccgacgctttagattgaaggcgtg 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21239055 ctaccagaattttaaatgttgctcttaaagttaataagtatcagagcacctacatcgaatacaacttatttagccaccgacgcttcagattgaaggcgtg 21238956  T
Q  306 cctcatgttcaactgacacgacacatgtagtattcatagcaccaacttttctgatcgaagacatgtctggtgtctgactccacactaacacatgtgatta 405  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21238955 cctcatgttcaactgacacgacacatgtagtattcatagcaccgacttttctaatcgaagacatgtctggtgtctgactccacactaacacatgtgatta 21238856  T
Q  406 cattcaattatgacattttcttaaattactaccagtttcaatgtacttgtgtctgtctggtatctgcttatgtgcttcatagcaatgt 493  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21238855 cattcaattttgacattttcttaaattactaccagtttcaatgtacttgtgtctgtctggtatctgcttatgtgcttcatagcaatgt 21238768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 10893871 - 10893919
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattact 435  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  10893871 acaccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 650570 - 650526
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  650570 acacatgtgattgcattcaattatgtcattttcttaaattactac 650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 43160535 - 43160491
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  43160535 acacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 18750925 - 18750882
Alignment:
Q  395 acatgtgattacattcaattatgacattttcttaaattactacc 438  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattacc 18750882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 37776039 - 37775989
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    ||||| ||||||||||||||||| ||||||| |||||||| ||||||||||    
T  37776039 acactgacacatgtgattacatttaattatgtcattttctcaaattactac 37775989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 23720511 - 23720467
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactacc 438  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  23720511 acacatgtgattacattcaattatga-tttttcttaaattactacc 23720467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Original strand, 10893354 - 10893397
Alignment:
Q  392 aacacatgtgattacattcaattatgacattttcttaaattact 435  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||    
T  10893354 aacacatgcgattacattcaattatgtcattttctcaaattact 10893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Original strand, 44172892 - 44172938
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||| |||||||||||||||||| ||||||| |||||||| ||||||    
T  44172892 acacaaacacatgtgattacattgaattatgtcattttctcaaatta 44172938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 12667970 - 12667999
Alignment:
Q  387 acactaacacatgtgattacattcaattat 416  Q
    ||||||||||||||||||||||||||||||    
T  12667970 acactaacacatgtgattacattcaattat 12667999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 31837808 - 31837760
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattact 435  Q
    |||| |||||||| ||||||||||||||||  |||||||| ||||||||    
T  31837808 acaccaacacatgagattacattcaattatttcattttctcaaattact 31837760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 449
Target Start/End: Complemental strand, 32691801 - 32691738
Alignment:
Q  386 cacactaacacatgtgattacattcaattatgacattttcttaaattactaccagtttcaatgt 449  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  32691801 cacactgacacatgtgattacattcaattatgtcattttcttaaattactaccggtgtcaatgt 32691738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 31681838 - 31681881
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattacta 436  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  31681838 acacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 33684878 - 33684923
Alignment:
Q  379 ctgactccacactaacacatgtgattacattcaattatgacatttt 424  Q
    ||||||| |||||||||||||||||||||||||||| || ||||||    
T  33684878 ctgactcgacactaacacatgtgattacattcaattttgtcatttt 33684923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 8917544 - 8917592
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    |||||| |||||||||||||||||| ||||||||||||| || ||||||    
T  8917544 acacatctgattacattcaattatgtcattttcttaaatcacaaccagt 8917592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 436
Target Start/End: Original strand, 24758532 - 24758571
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaaattacta 436  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  24758532 atgtgattatattcaattatgtcattttcttaaattacta 24758571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 16994091 - 16994051
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  16994091 acacatgtgattacattcaattctgtcattttctcaaatta 16994051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 10164510 - 10164469
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaaattactacc 438  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactacc 10164469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 45615423 - 45615468
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactacc 438  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||    
T  45615423 acacatgtgattacgttcaattatgtcattttcttaaattactacc 45615468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 8457973 - 8457928
Alignment:
Q  396 catgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaattattaccagt 8457928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 9988707 - 9988752
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactacc 438  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||    
T  9988707 acacatgtgattacattcaattatgtcattttctcaaataactacc 9988752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 683103 - 683059
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  683103 acacatgtgattacattcaattatgtcattttctcaaattcctac 683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 28890816 - 28890768
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattact 435  Q
    ||||| |||||||||||| ||||||||||||  ||||||||||||||||    
T  28890816 acactcacacatgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 39439261 - 39439221
Alignment:
Q  398 tgtgattacattcaattatgacattttcttaaattactacc 438  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  39439261 tgtgattacattcaatttttacattttcttaaattactacc 39439221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 10517999 - 10518034
Alignment:
Q  403 ttacattcaattatgacattttcttaaattactacc 438  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10517999 ttacattcaattatgtcattttcttaaattactacc 10518034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 25400892 - 25400849
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattacta 436  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||    
T  25400892 acacatgtgataacatttaattatgtcattttcttaaattacta 25400849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 421
Target Start/End: Complemental strand, 12651091 - 12651057
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacat 421  Q
    |||| ||||||||||||||||||||||||||||||    
T  12651091 acaccaacacatgtgattacattcaattatgacat 12651057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 20120002 - 20119956
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  20120002 acactaacacatgtgattacattaaattatttcattttctcaaatta 20119956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Original strand, 43093527 - 43093573
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||| |||||||||||||||||||||||| |||||| | ||||||    
T  43093527 acactatcacatgtgattacattcaattatgccattttttcaaatta 43093573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 50216696 - 50216733
Alignment:
Q  399 gtgattacattcaattatgacattttcttaaattacta 436  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  50216696 gtgattacattcaattatgtcattttcttaaatcacta 50216733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 19262932 - 19262972
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  19262932 acacatgtgattacattcaattatgtcatcttctcaaatta 19262972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 429
Target Start/End: Original strand, 29388378 - 29388410
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaa 429  Q
    ||||||||||||||||||||| |||||||||||    
T  29388378 atgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 34093961 - 34093997
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  34093961 atgtgattgcattcaattatgacattttctcaaatta 34093997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 41989606 - 41989570
Alignment:
Q  402 attacattcaattatgacattttcttaaattactacc 438  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  41989606 attacattcaattatgtcattttcttaaattattacc 41989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 46981470 - 46981518
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    |||||||||| ||||||  |||||| |||||||||| ||||||||||||    
T  46981470 acacatgtgaatacattttattatgtcattttcttatattactaccagt 46981518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 1502625 - 1502577
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    ||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  1502625 acacatgtgattacattcaattatgtcattttcttagattattaccagt 1502577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 19323450 - 19323504
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    ||||| ||||||||||||| ||||||||||| |||||||| ||||||||| ||||    
T  19323450 acacttacacatgtgattaaattcaattatgtcattttctcaaattactatcagt 19323504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Original strand, 32166200 - 32166247
Alignment:
Q  402 attacattcaattatgacattttcttaaattactaccagtttcaatgt 449  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||    
T  32166200 attacattcaattatgtcattttctcaaattattaccagtgtcaatgt 32166247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 1916811 - 1916761
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    |||| |||||||||||||||||| |||| || || ||||||||||||||||    
T  1916811 acaccaacacatgtgattacattaaattttgtcaatttcttaaattactac 1916761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 13290727 - 13290677
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    ||||| |||||||||||||| || ||||||| ||||||||||| |||||||    
T  13290727 acactgacacatgtgattacttttaattatgtcattttcttaagttactac 13290677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 30367629 - 30367667
Alignment:
Q  395 acatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  30367629 acatttgattacattcaattatgtcattttcttaaatta 30367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 4946212 - 4946249
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaa 430  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  4946212 acacatgtgattacattcaattatatcattttcttaaa 4946249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 13635664 - 13635607
Alignment:
Q  354 ttctgatcgaagacatgtctggtgtctgactccacactaacacatgtgattacattca 411  Q
    ||||||| |||| | ||||||||||||||| | |||| || |||||||||||||||||    
T  13635664 ttctgatagaaggcgtgtctggtgtctgacacgacaccaaaacatgtgattacattca 13635607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 19730216 - 19730257
Alignment:
Q  392 aacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||||||| ||||||||||||| |||||||| ||||||    
T  19730216 aacacatgtgatcacattcaattatgtcattttctcaaatta 19730257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 19750806 - 19750847
Alignment:
Q  392 aacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||||||| ||||||||||||| |||||||| ||||||    
T  19750806 aacacatgtgatcacattcaattatgtcattttctcaaatta 19750847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 45382790 - 45382750
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaaattactac 437  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  45382790 atgtgattacattcaaatatgttattttcttaaattactac 45382750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 433
Target Start/End: Original strand, 6284663 - 6284709
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  6284663 acactaacacatgtgattaaattcaattatgtcattttctcaaatta 6284709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 29449732 - 29449686
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactacca 439  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||    
T  29449732 acacatgtgattacattcaattatgttattttctgaaattactacca 29449686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 10522958 - 10522999
Alignment:
Q  400 tgattacattcaattatgacattttcttaaattactaccagt 441  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  10522958 tgattatattcaattatgtcattttcttaaattactaccagt 10522999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 10335384 - 10335428
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||    
T  10335384 acacatctgattacattcaattatgtcattttctcaaattactac 10335428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 34058005 - 34057962
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattacta 436  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||    
T  34058005 acacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 30537557 - 30537495
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactaccagtttcaatgt 449  Q
    ||||| |||||| |||| |||||||||||||  ||||||||||||||||| | || |||||||    
T  30537557 acactgacacatctgataacattcaattatgttattttcttaaattactaacggtgtcaatgt 30537495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 30600605 - 30600555
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    ||||| |||||| ||||||| ||| |||||| |||||||||||||||||||    
T  30600605 acactgacacatatgattacgttctattatgtcattttcttaaattactac 30600555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 3151385 - 3151433
Alignment:
Q  388 cactaacacatgtgattacattcaattatgacattttcttaaattacta 436  Q
    |||||||||||||||||||||||||  ||  |||||||| |||||||||    
T  3151385 cactaacacatgtgattacattcaacaattccattttctcaaattacta 3151433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 10158035 - 10157995
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||||||| ||||||| |||||||| ||||||    
T  10158035 acacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 645380 - 645342
Alignment:
Q  396 catgtgattacattcaattatgacattttcttaaattac 434  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  645380 catgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 27253342 - 27253296
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||    
T  27253342 acactgacacatgtgattacattcaattatgacattttttcaaatta 27253296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 41755365 - 41755327
Alignment:
Q  402 attacattcaattatgacattttcttaaattactaccag 440  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  41755365 attacattcaattatgtcattttcttacattactaccag 41755327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 7512250 - 7512205
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactacc 438  Q
    |||||| |||||||||||||| ||| |||||||| |||||||||||    
T  7512250 acacatctgattacattcaataatgtcattttctcaaattactacc 7512205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 10358155 - 10358115
Alignment:
Q  392 aacacatgtgattacattcaattatgacattttcttaaatt 432  Q
    ||||||| |||||||||||| ||||| ||||||||||||||    
T  10358155 aacacatttgattacattcagttatgtcattttcttaaatt 10358115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 29365061 - 29365017
Alignment:
Q  389 actaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||    
T  29365061 actaacacctgtgattacatttaattataccattttcttaaatta 29365017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 35129970 - 35130010
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  35129970 acacatgtgatctcattcaattatgccattttcttaaatta 35130010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 36611511 - 36611467
Alignment:
Q  392 aacacatgtgattacattcaattatgacattttcttaaattacta 436  Q
    ||||||||| ||||| |||||||||| |||||||||||| |||||    
T  36611511 aacacatgtcattacgttcaattatgtcattttcttaaactacta 36611467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 41514326 - 41514376
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactac 437  Q
    ||||||||||||||||||||||||||| ||| | ||||||| |||||||||    
T  41514326 acactaacacatgtgattacattcaatcatgtccttttctttaattactac 41514376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 32843760 - 32843716
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||    
T  32843760 atgtgattacattcaattatgtcattttctcatattactaccagt 32843716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 432
Target Start/End: Original strand, 6626481 - 6626520
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatt 432  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  6626481 acacatgcgattacattcaattatgacactttcttaaatt 6626520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 16630852 - 16630806
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||| ||||||||||||| ||| ||||||| |||||||||||||||    
T  16630852 acactgacacatgtgattaaattgaattatgtcattttcttaaatta 16630806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 18622466 - 18622426
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||||||| |||| ||||||| |||||||||||||||    
T  18622466 acacatgtgattgcatttaattatgtcattttcttaaatta 18622426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 13709243 - 13709181
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactaccagtttcaatgt 449  Q
    ||||| |||||| ||||||||||||||| || ||||||||||||| |||| |||| |||||||    
T  13709243 acactgacacatctgattacattcaattttgtcattttcttaaatcactatcagtgtcaatgt 13709181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 26462653 - 26462693
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  26462653 acacatgtgattacattcaattatttcattttcttaaatta 26462693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 31667476 - 31667428
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactaccagt 441  Q
    ||||||||||||||||| ||||||| |||||||| |||||| |||||||    
T  31667476 acacatgtgattacatttaattatgtcattttctaaaattattaccagt 31667428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 15792980 - 15793035
Alignment:
Q  376 tgtctgactccacactaacacatgtgattacattcaattatgacattttcttaaat 431  Q
    |||||||||| ||||| |||||||||||||| ||||||| || |||||| ||||||    
T  15792980 tgtctgactcgacactgacacatgtgattacgttcaattgtgtcatttttttaaat 15793035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 18556028 - 18556079
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaattactacc 438  Q
    ||||| ||||||||||||||| ||||||||| |||||| |||||||| ||||    
T  18556028 acactgacacatgtgattacagtcaattatgtcattttattaaattattacc 18556079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 21057840 - 21057794
Alignment:
Q  387 acactaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||| |||||||||||||||||  ||||||| ||||||    
T  21057840 acactaacacatgcgattacattcaattatgttattttctaaaatta 21057794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 23605089 - 23605171
Alignment:
Q  354 ttctgatcgaagacatgtctggtgtctgactccacactaacacatgtgattacattcaattatgacattttcttaaattacta 436  Q
    ||||||| |||||| |||||| |||||||| | ||||| |   |||||||||||||||||| ||  ||||||| |||||||||    
T  23605089 ttctgatggaagacgtgtctgttgtctgacgcgacactgatggatgtgattacattcaattttgttattttctcaaattacta 23605171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 17166823 - 17166872
Alignment:
Q  397 atgtgattacattcaattatgacattttcttaaattactaccagtttcaa 446  Q
    ||||| ||||||||||||||| |||||| | ||||||||||| |||||||    
T  17166823 atgtggttacattcaattatgtcattttgtcaaattactacctgtttcaa 17166872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 8203876 - 8203832
Alignment:
Q  389 actaacacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||| |||||||||||||| ||||| |||||||| ||||||    
T  8203876 actaacacttgtgattacattcacttatgtcattttctcaaatta 8203832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 29230116 - 29230060
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaattactaccagtttcaatgt 449  Q
    |||||||  |||||||||||||||| |||||||| |||||| |||| || |||||||    
T  29230116 acacatgatattacattcaattatgtcattttctcaaattattaccggtgtcaatgt 29230060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 41500721 - 41500757
Alignment:
Q  400 tgattacattcaattatgacattttcttaaattacta 436  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41500721 tgattacattcaattatatcattttcttaaattacta 41500757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 41510899 - 41510935
Alignment:
Q  400 tgattacattcaattatgacattttcttaaattacta 436  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41510899 tgattacattcaattatatcattttcttaaattacta 41510935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 43609826 - 43609866
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    |||||||||||||||||||||||||  ||||||| ||||||    
T  43609826 acacatgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 66196 - 66233
Alignment:
Q  392 aacacatgtgattacattcaattatgacattttcttaa 429  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  66196 aacacatgtaattacattaaattatgacattttcttaa 66233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 59176 - 59136
Alignment:
Q  393 acacatgtgattacattcaattatgacattttcttaaatta 433  Q
    ||||||||||||||||||||||||| | |||| ||||||||    
T  59176 acacatgtgattacattcaattatgtcgttttattaaatta 59136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University